Digesting Carbohydrates: Amylase variants

Carbohydrate digestion begins in the mouth with an enzyme called amylase.  Saliva mixes with your food as you chew it, and the amylase in saliva begins breaking down carbohydrates into simple sugars.  Amylase is also produced by the pancreas and used for further breaking down carbs in the small intestines.

Amylase isn’t the only enzyme involved in breaking down carbohydrates; it is just the first step.  Amylase helps convert starches eventually into maltose or maltotriose, which are then converted by the enzymes maltase into glucose in the small intestines. Glucose then is utilized by the body for energy production.   (Vampire bats are the only mammals not to produce maltase)

Amylase is coded for by the genes AMY1 in the saliva, and AMY2A and AMY2B in the pancreas.  These genes vary widely in the number of copies of the gene that a person can have.  For example, AMY1 can vary between 2 and 17 copies, thus giving a wide variation in the amount of amylase a person normally secretes in their saliva. [study]

Several studies that have found that low AMY1 copy numbers are associated with higher BMI.  [study] [study] [study]  In contrast, a large study published in Nature Genetics in 2015 found no association between amylase copy numbers and BMI.  Part of the discrepancy may be differences in diet in the populations; perhaps it is a mismatch between the percentage of carbs in the diet and the ability to break down carbohydrates that causes an increase in BMI.

Other interesting studies:

  • Cellulose can inhibit amylase activity. [study] This makes me wonder if the presence of cellulose gum in so many processed food products makes a difference in how we break down processed foods?
  • Tannins in sorghum reduce amylase activity. [study]  Tea polyphenols also inhibit amylase. [study]
  • Lower amylase activity is associated with higher reliance on fatty acids for energy. [study]
  • Higher amylase activity was associated with lower blood glucose concentration after eating starch in a small study (14 people). [study]

23andMe and Ancestry data do not give copy number variation information, but several studies have linked specific SNPs to higher or lower amylase activity and copies of the gene.

A couple of studies note that rs11185098 is associated with amylase activity: The  A allele having higher amylase activity and the G allele lower activity [study] [study] [study]

study looking at the effects of weight loss diets over a two year period found that those with higher amylase activity (carriers of the A allele for rs11185098) were less likely to regain the weight that they had lost. Those that carried the G allele tended to regain weight. This study was interesting because it showed that the type of diet (low carb, low fat, high protein, etc) did not have an effect on weight loss based on amylase activity.

Another study linked a tendency towards higher carbohydrate and starch intake to those with the A allele. [study]

Check your 23andMe results for rs11185098 (v.4 only):

  • AA: higher amylase activity
  • AG: intermediate amylase activity
  • GG: lower amylase activity



There are many digestive enzyme supplements available that contain amylase.  One brand that I like is Enzymetica, but there are other good brands as well.

It may be worth experimenting with your diet based on your amylase production — perhaps reducing the proportion of carbs in a meal if you are a low amylase producer would make a difference in how you feel after the meal?

2 Replies to “Digesting Carbohydrates: Amylase variants”

  1. Hi! Thank you for this interesting article.
    I have rs11185098 GG and I’ve noticed that I don’t do well with digesting things like grains and beans and it’s much easier for me to lose weight and maintain my weight loss eating a low carbohydrate diet.

    1. Thanks for reading the article! Isn’t it cool to see how genes play a role in which foods work best :-) I’m a high amylase producer and feel like I could do just fine eating potatoes and rice for every meal (not that I’m going to do that!). It’s nice to know that there are good reasons why a diet works well for one person and isn’t a great fit for another.

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