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Choline, An Essential Nutrient Impacted By Genes

Choline is an essential nutrient that a lot of us don’t get enough of. In fact, the majority of the US population doesn’t get enough choline on a daily basis. Insufficient choline can impact mental sharpness, heart health, fatty liver disease, and more.[ref]

This article digs into the research on the various forms of choline and how genetic variants impact our need for choline. Genetics plays a big role in how well your body creates and uses choline. Members will see their genotype report below, plus additional solutions in the Lifehacks section. Join today 

Why do we need choline?

Choline is involved in several critical roles in the body, including:

  • supporting methylation reactions through donating a methyl group
  • formation of acetylcholine, a neurotransmitter and cell-signaling molecule
  • formation of phosphatidylcholine, which makes up cell membranes[ref]
  • muscle function[ref]
  • deficiency in choline contributes to non-alcoholic fatty liver disease (NAFLD)[ref]

Recent studies of choline show:

  • Academic achievement in 15-year-olds is significantly associated with plasma choline levels.[ref] Wow – I have a hard time wrapping my head around the idea that a nutrient can be that important for academic achievement.
  • Choline plus B vitamins may increase neuroplasticity and speed recovery after a stroke.[ref]
  • Choline deficiency is correlated to lower bone mineral density.[ref]

Making choline in the body vs. choline from food:

Generally, people can make some choline in their liver. This is not enough choline to meet all the body’s needs, though, so it is essential to also get choline via the diet. Additionally, some people have genetic variants that reduce their ability to make choline, thus increasing their need for choline from food.

The FDA recommends an adequate intake for adults of 425-550 mg/day for choline.[ref]

There are a number of food sources of choline that are easily incorporated into your diet. Check out our Choline-rich foods and recipes article.

Acetylcholine – an important neurotransmitter:

Choline is the precursor to acetylcholine, which is an important neurotransmitter. Acetylcholine is the signaling molecule for neurons that control muscles, heart rhythm, and other functions.

Choline in the methylation cycle:

Your body’s need for choline from the diet will depend partly on how much folate you eat and how well your methylation cycle works. Choline acts as a methyl donor in the methylation cycle, and with low folate or decreased enzyme efficiency in the folate pathways, your choline requirement may increase.

Specifically, choline in the form of betaine (also known as trimethylglycine) acts as a methyl donor within the methylation cycle.[ref]

When choline levels are low, homocysteine levels can increase, which is associated with an increased risk of cardiovascular disease. Increasing levels of betaine in the diet are linked with lower homocysteine levels.[ref]

A study published in the American Journal of Clinical Nutrition found that with just two weeks of supplemental choline (2.6 g/day as phosphatidylcholine), homocysteine levels dropped by 18% compared to placebo.[ref]

Choline for the brain:

Choline is a precursor for acetylcholine, a neurotransmitter involved in learning and memory. Acetylcholine is essential for healthy cognitive function. Simply put, we need choline to think and function well.[ref]

In a mouse model of Alzheimer’s disease, giving the mice choline for most of their lives reduced the Alzheimer’s pathology.[ref] Yes – this is just a mouse study. But the cholinergic system is important in Alzheimer’s disease, and commonly used medications for Alzheimer’s include acetylcholinesterase inhibitors.

Fatty liver disease and choline deficiency:

A study of 57 normal adults investigated the effects of limiting either choline from the diet or folate from the diet for a period of 6 weeks. The study found that 77% of postmenopausal women and 80% of men developed fatty-liver disease in the six weeks of choline deprivation (<50mg/day). No significant changes were found from limiting folate in the diet.[ref]

Choline requirements in pregnancy:

Choline is an essential component of cell membranes, so a developing fetus needs a lot of choline. Women who are pregnant or nursing thus have a greater need for choline. When pregnant, a woman will produce more choline, which is then transported to the developing baby. So despite the increased production of choline, pregnant women end up low in choline. Breast milk is also high in choline, so nursing the baby also depletes the mother of choline.[ref]


Choline Genotype Report:

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Lifehacks: Diet and Supplement Options

Food sources of Choline:

Excellent (egg-cellent :-) sources of choline in foods include: eggs, liver, shitake mushrooms, milk, and various types of meat.[ref]

Food sources of choline – National Institute of Health, Health Professionals Fact Sheet
Food Mg per
serving
Percent
DV
Beef liver, pan-fried, 3 ounces 356 65
Egg, hard-boiled, 1 large egg 147 27
Beef top round, separable lean only, braised, 3 ounces 117 21
Soybeans, roasted, ½ cup 107 19
Chicken breast, roasted, 3 ounces 72 13
Beef, ground, 93% lean meat, broiled, 3 ounces 72 13
Fish, cod, Atlantic, cooked, dry heat, 3 ounces 71 13
Mushrooms, shiitake, cooked, ½ cup pieces 58 11
Potatoes, red, baked, flesh and skin, 1 large potato 57 10
Wheat germ, toasted, 1 ounce 51 9
Beans, kidney, canned, ½ cup 45 8
Quinoa, cooked, 1 cup 43 8
Milk, 1% fat, 1 cup 43 8
Yogurt, vanilla, nonfat, 1 cup 38 7

Meat and eggs are the most abundant sources of choline — but even so, a serving of chicken breast gives you 13% of the recommended daily value.

In short, if you want to know how much choline you normally get in your diet, you should track what you eat for a week or so. The free online app, cronometer.com, includes the choline content of foods. Choline content isn’t enabled by default, so you will need to go into the settings and turn on ‘choline’.

There are a number of food sources of choline that are easily incorporated into your diet. Check out our Choline-rich foods and recipes article.

Supplement Options:

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Related Articles and Topics:

Alzheimer’s Gene: Find your APOE type from your genetic raw data

MTHFR Gene Explained: C677T and A1298C Variants, Testing, and Solutions


References:

Bale, Govardhan, et al. “Whole-Exome Sequencing Identifies a Variant in Phosphatidylethanolamine N-Methyltransferase Gene to Be Associated With Lean-Nonalcoholic Fatty Liver Disease.” Journal of Clinical and Experimental Hepatology, vol. 9, no. 5, 2019, pp. 561–68. PubMed, https://doi.org/10.1016/j.jceh.2019.02.001.
Chmurzynska, Agata, et al. “PEMT Rs12325817 and PCYT1A Rs7639752 Polymorphisms Are Associated with Betaine but Not Choline Concentrations in Pregnant Women.” Nutrition Research (New York, N.Y.), vol. 56, Aug. 2018, pp. 61–70. PubMed, https://doi.org/10.1016/j.nutres.2018.04.018.
Choline | Linus Pauling Institute | Oregon State University. 28 Apr. 2014, https://lpi.oregonstate.edu/mic/other-nutrients/choline.
Christensen, Karen E., et al. “The MTHFD1 p.Arg653Gln Variant Alters Enzyme Function and Increases Risk for Congenital Heart Defects.” Human Mutation, vol. 30, no. 2, Feb. 2009, pp. 212–20. PubMed, https://doi.org/10.1002/humu.20830.
da Costa, Kerry-Ann, Olga G. Kozyreva, et al. “Common Genetic Polymorphisms Affect the Human Requirement for the Nutrient Choline.” The FASEB Journal : Official Publication of the Federation of American Societies for Experimental Biology, vol. 20, no. 9, July 2006, pp. 1336–44. PubMed Central, https://doi.org/10.1096/fj.06-5734com.
da Costa, Kerry-Ann, Karen D. Corbin, et al. “Identification of New Genetic Polymorphisms That Alter the Dietary Requirement for Choline and Vary in Their Distribution across Ethnic and Racial Groups.” FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology, vol. 28, no. 7, July 2014, pp. 2970–78. PubMed, https://doi.org/10.1096/fj.14-249557.
———. “Identification of New Genetic Polymorphisms That Alter the Dietary Requirement for Choline and Vary in Their Distribution across Ethnic and Racial Groups.” The FASEB Journal, vol. 28, no. 7, July 2014, pp. 2970–78. PubMed Central, https://doi.org/10.1096/fj.14-249557.
Fischer, Leslie M., et al. “Sex and Menopausal Status Influence Human Dietary Requirements for the Nutrient Choline.” The American Journal of Clinical Nutrition, vol. 85, no. 5, May 2007, pp. 1275–85. PubMed, https://doi.org/10.1093/ajcn/85.5.1275.
Ganz, Ariel B., et al. “Genetic Variation in Choline-Metabolizing Enzymes Alters Choline Metabolism in Young Women Consuming Choline Intakes Meeting Current Recommendations.” International Journal of Molecular Sciences, vol. 18, no. 2, Jan. 2017, p. 252. PubMed Central, https://doi.org/10.3390/ijms18020252.
Jadavji, Nafisa M., et al. “B-Vitamin and Choline Supplementation Increases Neuroplasticity and Recovery after Stroke.” Neurobiology of Disease, vol. 103, July 2017, pp. 89–100. PubMed, https://doi.org/10.1016/j.nbd.2017.04.001.
Kohlmeier, Martin, et al. “Genetic Variation of Folate-Mediated One-Carbon Transfer Pathway Predicts Susceptibility to Choline Deficiency in Humans.” Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 44, Nov. 2005, pp. 16025–30. PubMed Central, https://doi.org/10.1073/pnas.0504285102.
Muramatsu, Ikunobu, et al. “A New Aspect of Cholinergic Transmission in the Central Nervous System.” Nicotinic Acetylcholine Receptor Signaling in Neuroprotection, edited by Akinori Akaike et al., Springer, 2018. PubMed, http://www.ncbi.nlm.nih.gov/books/NBK543557/.
Nast, Condé. “SELF: Health, Fitness, Nutrition, Beauty, Love, and Culture.” SELF, https://www.self.com/. Accessed 17 Feb. 2026.
Nilsson, Torbjörn K., et al. “Plasma 1-Carbon Metabolites and Academic Achievement in 15-Yr-Old Adolescents.” FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology, vol. 30, no. 4, Apr. 2016, pp. 1683–88. PubMed, https://doi.org/10.1096/fj.15-281097.
Office of Dietary Supplements – Choline. https://ods.od.nih.gov/factsheets/Choline-HealthProfessional/. Accessed 17 Feb. 2026.
Olthof, Margreet R., et al. “Choline Supplemented as Phosphatidylcholine Decreases Fasting and Postmethionine-Loading Plasma Homocysteine Concentrations in Healthy Men.” The American Journal of Clinical Nutrition, vol. 82, no. 1, July 2005, pp. 111–17. PubMed, https://doi.org/10.1093/ajcn.82.1.111.
Øyen, Jannike, et al. “Dietary Choline Intake Is Directly Associated with Bone Mineral Density in the Hordaland Health Study.” The Journal of Nutrition, vol. 147, no. 4, Apr. 2017, pp. 572–78. PubMed, https://doi.org/10.3945/jn.116.243006.
Tan, Hwa-Li, et al. “Phosphatidylethanolamine N-Methyltransferase Gene Rs7946 Polymorphism Plays a Role in Risk of Nonalcoholic Fatty Liver Disease: Evidence from Meta-Analysis.” Pharmacogenetics and Genomics, vol. 26, no. 2, Feb. 2016, pp. 88–95. PubMed, https://doi.org/10.1097/FPC.0000000000000193.
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———. “Choline: An Essential Nutrient for Public Health.” Nutrition Reviews, vol. 67, no. 11, Nov. 2009, pp. 615–23. PubMed Central, https://doi.org/10.1111/j.1753-4887.2009.00246.x.

About the Author:
Debbie Moon is a biologist, engineer, author, and the founder of Genetic Lifehacks where she has helped thousands of members understand how to apply genetics to their diet, lifestyle, and health decisions. With more than 10 years of experience translating complex genetic research into practical health strategies, Debbie holds a BS in engineering from Colorado School of Mines and an MSc in biological sciences from Clemson University. She combines an engineering mindset with a biological systems approach to explain how genetic differences impact your optimal health.