Lipoprotein a: How to check your genetic data for Lp(a)

Heart disease is the number one cause of death in the US and most countries around the world. We often have a picture in our heads of someone at risk for a heart attack… For example, an overweight, older man who looks unhealthy, probably with a stressful job. It is often tempting to think that people who exercise, are thin, and look healthy are at low risk for heart disease. But beneath all the healthiness can lurk a genetically driven risk factor for a heart attack: elevated lipoprotein(a).

Look at the numbers: Being obese increases the relative risk of heart disease by 28%.[ref] But someone with genetically elevated Lp(a) can have a 300% increase in the risk of a heart attack.

This article digs into research on lipoprotein (a) and the genetic variants that can cause it to be elevated. I’ll explain how to check your genetic data (e.g., 23 and Me or AncestryDNA) to see if you carry the variants and then the next steps to take with getting blood tests done. Members will see their genotype report below, plus additional solutions in the Lifehacks section. Join today 

What is lipoprotein a?

Lipoprotein(a) or LP(a) — said “L- P- little a” — is a blood particle that carries LDL cholesterol and proteins. Elevated levels of Lp(a) are a strong risk factor for having a heart attack due to atherosclerosis.[ref]

We all know that fats and water don’t mix. It remains true in the body regarding moving around fats in the bloodstream. The term lipoprotein is a general term for a glob of fatty acid plus protein that is packaged so it can easily be transported throughout the body. Lipoproteins include low-density and high-density cholesterol.

Lipoprotein (a) includes an LDL particle bound to an apolipoprotein (a) – known as apo(a) – and apoB100. The apo(a) part is what increases atherosclerosis. It also promotes clotting by interfering with the way that the body dissolves clots.[ref] So, you have a double-whammy of increasing atherosclerosis via increased inflammation plus oxidized LDL. The LDL tends to oxidize once inside a vessel wall adding more inflammation responses because their structure has changed. It all adds to a mechanism that increases the risk of blood clots.[ref]

The Lp(a) molecule can vary a lot in size, and you can inherit two different sizes of Lp(a) – one from mom and one from dad.[ref]

Detailed article on Lp(a)

Lp(a), Bob Harper, and the risk of a sudden heart attack:

The Biggest Loser host and fitness trainer, Bob Harper, has been open about his recovery from a very serious heart attack in 2017. He was the epitome of healthiness – fitness trainer, nutritional guru, athlete, and only in his early fifties. But he also had genetically elevated levels of Lp(a). Here is a Today Show interview where he explains some of his recovery and what he is doing to prevent a second heart attack.

A recent study in India showed that high Lp(a) levels – defined as >50mg/dl) increased the risk of coronary artery disease in younger people by 2 to 3-fold.[ref]

Is lipoprotein heritable?

“Family history” is always mentioned by the doctor as an important indicator of your risk of heart disease, especially if a family member had a heart attack at a young age. Lp(a) is often the reason that this question is asked.

A significant way that researchers have found family history playing a role is through the inheritance of a genetic variant that increases lipoprotein(a).

Lp(a) levels are estimated to be 90% hereditary. (That’s really high when it comes to hereditary estimates!)[ref]

Is Lp(a) a big deal – or just another scare tactic?

There are questions and controversy on the role cholesterol plays in heart disease, which may lead some people to dismiss Lp(a) as just the latest number to talk about. I think it would be a big mistake to dismiss the research on Lp(a).

There is abundant research that high Lp(a) increases the risk for:[ref][ref][ref][ref]

  • sudden heart attack
  • narrowing of the arteries
  • stroke
  • aortic stenosis.

Additionally, low Lp(a) levels are linked with a lower risk of heart failure, stroke, vascular disease, and aortic stenosis.[ref]

The kicker: Genetic studies show that variants linked to high Lp(a) correlate to a shorter lifespan. When averaging together information from more than 100,000 people, the presence of an Lp(a) genetic variant caused an average decrease in lifespan of 1.5 years.[ref]

How high is high?

When you get your Lp(a) test results, how do you know if it is just slightly high or seriously scary?

  • One study shows a 3x risk of aortic valve stenosis for those with Lp(a) levels greater than 90 mg/dl.[ref]
  • Another source says normal Lp(a) levels are less than 30 mg/dl (or 75 nmol/L).[ref]
  • Some researchers consider normal to be less than 50 mg/dl.[ref][ref]

It is important enough to talk to a doctor about and keep up with the research as it comes out.

Not all studies agree… as usual

A 2012 study in people with diabetes found that higher Lp(a) levels did not correlate with an increased risk of heart disease. Note that there was no additional risk above the high risk from having diabetes.[ref]

A study on women found that Lp(a) levels were only important in cardiovascular disease if the women also had high cholesterol (>220 mg/dl).[ref]

One problem with the epidemiological studies on Lp(a) is that most of them only last for 5 to 10 years, which may not be enough time to really determine causality.

Lipoprotein (a) Genotype Report

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The LPA gene controls the formation of the lipoprotein(a) molecule. Variants in the gene cause the body to create more Lp(a).

These first two genetic variants cover about 40% of the variation in Lp(a) levels — other, less common variants also raise Lp(a) levels.

Check your genetic data for rs3798220 (23andMe v4, v5, AncestryDNA):

  • C/C: risk of elevated Lp(a), increased risk for heart disease – 3.7x risk of aortic stenosis[ref][ref][ref]
  • C/T: risk of elevated Lp(a), increased risk for heart disease, increased risk of aortic stenosis
  • T/T: typical

Members: Your genotype for rs3798220 is .

Check your genetic data for rs10455872 (23andMe v4, v5; AncestryDNA):

  • G/G: likely elevated Lp(a), increased risk for heart disease – 2x risk of aortic stenosis[ref][ref][ref]
  • A/G: likely elevated Lp(a), increased risk for heart disease
  • A/A: typical

Members: Your genotype for rs10455872 is .

Studies also showed that carrying one risk allele for both of the above — compound heterozygous — also doubled the risk of aortic stenosis.[ref]

Genetic variants that increase LDL cholesterol levels are also linked with higher Lp(a) levels. It makes sense that there could be more Lp(a) if your cholesterol levels are really high.

If you have full genome testing, check for these other LPA gene variants as well:

  • rs9457951 – this may be a better marker for African-Americans[ref]
  • rs6415085 – T allele linked to higher Lp(a)[ref]

Variants that lower Lp(a):

Check your genetic data for rs6919346 (23andMe v5; AncestryDNA):

  • C/C: typical
  • C/T: possibly decreased Lp(a)
  • T/T: decreased Lp(a)[ref][ref][ref]

Members: Your genotype for rs6919346 is

Check your genetic data for rs41272114 (23andMe v4, v5):

  • C/C: typical
  • C/T: lower Lp(a)
  • T/T: lower Lp(a)[ref] 5.25mg/dl lower Lp(a)[ref]

Members: Your genotype for rs41272114 is .

Check your genetic data for rs143431368 (23andMe v5 only):

  • T/T: typical
  • C/T: lower Lp(a)[ref]
  • C/C: lower Lp(a)[ref]

Members: Your genotype for rs143431368 is .



So what do you do if you carry the risk alleles for high Lp(a)? Knowledge is power here!

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Article originally published July 2018. Updated Apr. 2021


About the Author:
Debbie Moon is the founder of Genetic Lifehacks. Fascinated by the connections between genes, diet, and health, her goal is to help you understand how to apply genetics to your diet and lifestyle decisions. Debbie has a BS in engineering and also an MSc in biological sciences from Clemson University. Debbie combines an engineering mindset with a biological systems approach to help you understand how genetic differences impact your optimal health.

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