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Blood-Brain Barrier Integrity: Genetics and a Leaky BBB

Key takeaways:

  • The blood-brain barrier (BBB) prevents circulating toxins and pathogens from reaching the brain.
  • Tight junctions between the epithelial cells and specific transporters keep the brain isolated and protected.
  • Genetic variants can impact the susceptibility to having BBB dysfunction.
  • Blood-brain barrier dysfunction can be part of the cause of Alzheimer’s, depression, and neurological disorders.
Members will see their genotype report below and the solutions in the Lifehacks section. Consider joining today

What is the blood-brain barrier?

The blood-brain barrier is the term for the specialized membrane lining the vessels and capillaries in the brain. The blood vessels that move blood to the brain are unique in how they allow molecules to move through them.

This specialized semipermeable membrane tightly regulates what can pass through to the brain – and move out of the brain – with tight junctions between the cells lining the blood vessels. There are specific transporters in this barrier that regulate what can pass through it, to and from the brain.[ref][ref]

This tightly regulated blood-brain barrier keeps the brain and central nervous system protected from toxins, pathogens, and inflammation.

Capillaries: Capillaries are the small blood vessels that branch out throughout the brain, and they make up the majority of the blood-brain barrier. In the capillaries, the endothelial cells that line these tiny vessels are tightly wedged together. They allow oxygen and glucose into the brain while transporting out metabolic waste. These tight junctions in the BBB also prevent 98% of drugs from passing through to the brain.[ref]

Endothelial cells: The cells lining the blood vessels, endothelial cells, are joined together with tight junctions that prevent molecules from slipping through. In addition, the endothelium also contains transporters for actively transporting the nutrients and amino acids needed by the brain.

Surrounded by specialized cells: These tiny capillaries that supply the brain are surrounded by astrocytes, pericytes, and microglia – specialized types of brain cells that support and protect the neurons that make up the brain.[ref]

Together, this is called a neurovascular unit.

Screenshot from PMC10441638 showing a cross-sectional view of the endothelial cells lining capillaries in the brain, making up the BBB

A little history
The blood-brain barrier was discovered in the 1880s by the German microbiologist Paul Ehrlich. He was injecting animals with blue dye to determine the organ distribution, and he found that the brain and other parts of the central nervous system remained unaffected. While this was considered one of the first experiments referring to the physiology of the barrier, the term wasn’t used until 1921.[ref]

Structure of the BBB:

The endothelial cells lining the capillaries are tightly bound together with tight junctions formed by proteins called claudins and occludins. The endothelial cells that line the brain vessels have a flatter shape and tighter connections compared to the endothelial cells in blood vessels throughout the rest of the body. They also lack the small pores that are found in other parts of the endothelium.

The neurovascular unit includes endothelial cells, astrocytes, pericytes, and neurons, all working together to regulate what enters the brain and how waste products are removed from the central nervous system.[ref]

What can pass through the BBB?
The brain needs energy, oxygen, and nutrients, and these can pass through the BBB in different ways.[ref]

  • Small, lipid-soluble molecules such as oxygen and carbon dioxide can cross the BBB through passive transport.
  • Glucose and certain amino acids can pass through the BBB with a carrier-mediated transport process.
  • Hormones and insulin are moved through as needed.
  • Large molecules can be moved through the BBB through selective cell surface receptors that bind to the specific molecules to move them into the cell through endocytosis.
Diagram transport across the BBB of different types of particles.
screenshot from PMC8668349 showing transport across the BBB of different types of particles.

Transporters found in the BBB:

ABC Transport proteins are a family of transporters that use ATP to pump molecules across membranes, including the BBB.  ABCB1, ABCC1, and ABCG2 are transporters found in the BBB that are important for delivering drugs to the brain. These transporters can also move metabolic waste out of the brain.

Organic anion transporting polypeptides (OATPs) move specific organic substrates across the BBB. OATP1A2 (SLCO1A2 gene) and OATP2B1 (SLCO2B1 gene) are responsible for transporting many medications, thyroid hormones, and estrogen metabolites into the brain. Studies on these transporters show that genetic variants impact how much of certain medications, including dopamine receptor agonists, make it to the brain. [ref][ref][ref]

The Large Neutral Amino Acid Transporter 1 (LAT1, or SLC7A5) transports essential amino acids and drugs like L-DOPA across the blood-brain barrier. Signaling molecules, like leptin, can move into the brain through endocytosis after binding to their receptors.[ref]

Tight Junctions:

The tight junctions between the endothelial cells in the tiny vessels in the brain rely on claudin-5 (CLDN5 gene) and occludin to maintain the integrity of the barrier. Animal studies show that a lack of claudin-5 (CLDN5) allows molecules that are smaller than 800 Da to pass through to the brain.[ref]

Breaking down the BBB:

Matrix metalloproteinases are a family of enzymes that can break down the extracellular matrix, which is important in remodeling and renewing blood vessels (and other tissues). In reference to the blood-brain barrier, an excess of MMP function can increase BBB leakiness.[ref]

More specifically, the matrix metalloproteinase called MMP9 is the primary one that breaks down the type IV collagen and fibrin in the BBB.[ref] (See the genotype report for MMP9 variants)

There are multiple ways that MMP9 levels are kept in balance. One that is important in the aging brain is that the correct APOE secretion from astrocytes is part of the way that MMP9 is suppressed. This directly ties together the maintenance of the BBB, APOE, and MMP9 in the pathology seen in neurodegenerative diseases.[ref]

Inflammation and BBB leakiness:

Chronically elevated inflammatory cytokines, including TNF-alpha and IL-1B, play a role in reducing barrier function directly through activating astrocytes. Some inflammatory cytokines can cross the BBB, but others, such as TGF-β1, can’t enter the brain.  TNF-alpha crosses the BBB through receptor-mediated transport, meaning that the TNF receptor has to be present to move TNF-alpha into the brain. Keep in mind that the BBB is a two-way street, and inflammatory cytokines from the brain may be prevented from moving out in certain situations.[ref][ref]

Studies show that IL-1β, TNFα, and IL-6 break down tight junction proteins, including claudin-5 and occludin, between endothelial cells, significantly increasing permeability. [ref]

Which conditions are associated with BBB dysfunction?

Traumatic brain injury and stroke are acute conditions that can impair the BBB, but there are also a number of chronic conditions that a dysfunctional blood-brain barrier can impact.

Decreased BBB integrity can allow toxins or viruses into the brain, and it can also allow the body’s own inflammatory cytokines to flow into the central nervous system, increasing neuroinflammation, cognitive decline, and brain fog.

Let’s take a look at some of the research on conditions that involve a leaky blood-brain barrier.

ADHD and neurological disorders:

The CLDN5 gene encodes the claudin protein that maintains the blood-brain barrier tight junctions. A study in children and teens with ADHD (not on medications) showed that they had significantly lower CLDN5 levels than a matched control group.[ref]

Folate deficiency is implicated in several types of neurological disorders, including ASD and seizures. Folate transport across the BBB into the brain involves active endocytosis transport via folate receptor alpha (FOLR1 gene) and the reduced folate carrier (RFC).[ref]

Related article: FOLR1 genetic variants

Alzheimer’s and BBB dysfunction:

The BBB not only prevents toxins and viruses from reaching the brain, but it also can block substances from being removed from the brain. Amyloid-beta builds up in the brain in Alzheimer’s disease, and one reason is that BBB dysfunction can block the removal of amyloid beta.

Blood-brain barrier dysfunction is often an early event in Alzheimer’s disease, as shown on MRI imaging studies. The BBB dysfunction prevents the removal of amyloid beta from the brain. This is a vicious feedback loop where the amyloid deposits further damage the BBB.[ref][ref][ref]

Animal models of APOE E4 allele carriers show that the E4 allele increases MMP9, which breaks down the blood-brain barrier and impairs tight junctions. Intriguingly, removing APOE4 from the BBB region restored the blood-brain barrier integrity. This directly links the APOE E4 allele to BBB dysfunction and is likely playing a causal role in Alzheimer’s.[ref]

The blood-brain barrier in depression and schizophrenia:

BBB dysfunction is also part of major depressive disorder, PTSD, and schizophrenia.

In people with depression, several studies have shown markers of increased BBB permeability. Animal studies in models of depression show that there is a disruption of the tight junctions in the BBB epithelium. Stress is thought to cause a loss of claudin-5, and higher levels of circulating inflammatory cytokines, including TNF-alpha, also decrease claudin-5 expression, leading to BBB dysfunction.[ref]  A recent preprint study showed that people with depression due to trauma, PTSD, or stress were likely to have higher methylation of CLDN5 (less gene expression), which increases BBB leakiness.[ref]

Related article: Inflammation, genetics, and depression

Recent studies show that a dysfunctional BBB plays a critical role in schizophrenia by potentially triggering a neuroinflammatory cascade. Patients with schizophrenia have altered tight junction protein expression, including low claudin-5 and higher levels of MMP-9.  This disruption allows neurotoxic substances to reach the brain.[ref] A study on patients who had recently been diagnosed with schizophrenia found diagnostic signs of BBB dysruption in 18% of patients.[ref]

Related article: Schizophrenia genetic factors

Akathisia and transporting antipsychotic drugs out of the brain:

Akathisia is the feeling of intense restlessness and a need to move that often occurs after stopping certain types of psychiatric medications. It can cause pacing, rocking, and feeling like you’re jumping out of your skin. Researchers have traditionally thought of akathisia as involving overstimulation of certain brain regions and an imbalance of dopaminergic activation. However, newer studies are also showing that the blood-brain barrier may be involved.[ref]

The blood-brain barrier makes it hard for drugs to pass through to the brain, but it can also make it difficult for drugs to move back out of the brain. This brain –> blood direction is called efflux, and the ABC transporters are involved in moving drugs out of the brain.

Variants in ABCB1 increase the risk of akathisia in treatment with risperidone.[ref] Note that akathisia isn’t only due to the blood-brain barrier. Other genetic studies also point to the role of dopamine receptor variants.[ref]

Bacterial infections and gut-brain axis:

The body detects some bacterial pathogens by recognizing the lipopolysaccharide (LPS) on the bacterial membrane. LPS then causes a robust immune response, including in the blood-brain barrier. Researchers using animals showed that circulating LPS directly increases BBB permeability.[ref]

This ties to the health of your gut barrier to the gut-brain axis. A leaky gut barrier allows more bacterial exposure and LPS in the bloodstream, causing increased BBB permeability. Gut dysbiosis also increases LPS exposure in circulation, again leading to BBB dysfunction through altered tight junctions.[ref]

 

With this background information in mind, let’s take a look at how your genes influence the susceptibility to increased blood-brain barrier dysfunction.


Genotype report: Blood-Brain Barrier

CLDN5  gene: encodes the protein involved in tight junctions between the endothelial cells in the blood-brain barrier.

Check your genetic data for rs10314 (AncestryDNA before 2026):

  • G/G: increased ADHD diagnoses, lower CLDN5, and decreased blood-brain barrier integrity[ref]
  • C/G: increased ADHD diagnoses, lower CLDN5, and decreased blood-brain barrier integrity
  • C/C: typical

Members: Your genotype for rs10314 is .

 

MMP9 gene: encodes matrix metalloproteinase 9, an enzyme that can increase the breakdown of the blood-brain barrier

Check your genetic data for rs17576 (AncestryDNA)

  • G/G: increased MMP9 activity;[ref] increased susceptibility to tick-borne encephalitis[ref]
  • A/G: increased MMP9 activity (compared to AA); increased susceptibility to tick-borne encephalitis
  • A/A: typical risk

Members: Your genotype for rs17576 is .

 

ABCB1 gene: – blood-brain barrier efflux transporter that moves amyloid beta; also transports drugs into the brain. Note that two SNPs, rs1045642 (C3435T) and rs1128503 (C1236T), are almost always inherited together, so some studies may refer to one or the other of the SNPs.[ref] Rs1128503 is the only one included in this report, so that the information isn’t duplicated. The frequency of the variants ranges quite a bit, according to ancestry group. G is the minor allele in Asian populations, but T is the minor allele in Africans and Caucasians.[ref]

Check your genetic data for rs1128503 C1236T (23andMe v4, v5; AncestryDNA):

  • G/G: less drug transport out of the cell for some drugs, such as fexofenadine[ref][ref][ref], slower time to remission with some antidepressants [ref], increased relative risk of Alzheimer’s disease, less transport of amyloid beta out of the brain [ref]
  • A/G: intermediate transport
  • A/A: greater efflux, transport out of the cell [ref][ref][ref]

Members: Your genotype for rs1128503 is .

Check your genetic data for rs4148740 (23andMe v4, v5; AncestryDNA):

  • G/G: better response to amitriptyline, citalopram, paroxetine, or venlafaxine in depression patients[ref]; lower risk of chronic Lyme after antibiotic treatment[ref], likely less excretion (lower ABCB1 function)
  • A/G: typical risk
  • A/A: typical

Members: Your genotype for rs4148740 is .

Check your genetic data for rs2229109 G1199A (23andMe v4):

  • T/T: altered function[ref] reduced cellular accumulation of aldosterone, dexamethasone, and cortisol; reduced effectiveness of topical steroids [ref]; increased ABCB1 transport when exposed to progesterone, estrogen[ref], likely more excretion (higher ABCB1 function)
  • C/T: reduced cellular accumulation of aldosterone, dexamethasone, and cortisol; reduced effectiveness of topical steroids
  • C/C: typical

Members: Your genotype for rs2229109 is .

ABCG2 gene: transporter found in the BBB that can move drugs in and out of the brain

Check your genetic data for rs13120400 (23andMe v5; AncestryDNA):

  • C/C: likely increased barrier function; reduced transport of medications into the brain[ref]
  • C/T: likely increased barrier function; reduced transport of medications into the brain
  • T/T: typical

Members: Your genotype for rs13120400 is .

 

ABCC2 gene: transporter found in the BBB that can move drugs into the brain. It is also referred to as MRP2.

Check your genetic data for rs2273697  (23andMe v4, v5; AncestryDNA):

  • A/A: likely increased barrier function; reduced ABCC2 transport of medications into the brain[ref][ref]
  • A/G: likely increased barrier function; reduced transport of medications into the brain
  • G/G: typical

Members: Your genotype for rs2273697 is .

Check your genetic data for rs3740066 (23andMe v4, v5; AncestryDNA):

  • T/T: likely increased barrier function; decreased expression of ABCC2 transporters in the BBB, reduced transport of medications into the brain[ref]
  • C/T: likely increased barrier function; decreased expression of ABCC2 transporters in the BBB,
  • C/C: typical

Members: Your genotype for rs3740066 is .

SLCO1A2  gene: Encodes the OATP1A2 protein, which transports certain drugs and hormones across the BBB. Some of the drugs transported by OATP1A2 include bromocriptine, celiprolol, atorvastatin, rosuvastatin, fexofenadine, methotrexate, and sildenafil. Hormones transported by OATP1A2 include estrone 3-sulfate and DHEAS.[ref][ref]

Check your genetic data for rs11568563 E172D c.516A>C (23andMe v4, v5; AncestryDNA):

  • C/C: reduced transport into the brain of substances using OATP1A2 [ref][ref][ref]
  • A/C: increased risk of cognitive problems with stem cell treatment for blood cancers due to BBB dysfunction
  • A/A: typical

Members: Your genotype for rs11568563 is .

Check your genetic data for rs10841795 c.38T>C (23andMe v4, v5; AncestryDNA):

  • G/G: increased transport into the brain [ref]
  • A/G: increased transport into the brain
  • A/A: typical

Members: Your genotype for rs10841795 is .

SLCO2B1 gene: Encodes the OATP2B1 protein, which transports certain drugs and hormones across the BBB. Drugs transported include montelukast, atorvastatin, and rosuvastatin. [ref][ref]

Check your genetic data for rs12422149 c.935G>A (23andMe v4, v5; AncestryDNA):

  • A/A: reduced transport of certain drugs, including montelukast[ref][ref], rosuvastatin less effective for LDL-c[ref]
  • A/G: reduced transport of certain substances into the brain, rosuvastatin less effective for LDL-c
  • G/G: typical

Members: Your genotype for rs12422149 is .

Check your genetic data for rs2306168 1457C > T (23andMe v4, v5; AncestryDNA):

  • T/T: decreased OAT2B1 transporters[ref], altered response to certain medications[ref], rosuvastatin less effective for LDL-c[ref]
  • C/T: decreased OAT2B1 transporters, altered response to certain medications, rosuvastatin less effective for LDL-c
  • C/C: typical

Members: Your genotype for rs2306168 is .

SLC7A5 gene: encodes the LAT1 transporter, which transports essential amino acids (leucine, phenylalanine, tyrosine, etc.) and drugs like L-DOPA and gabapentin across the blood-brain barrier

Check your genetic data for rs4240803 (23andMe v4, v5):

  • A/A: increased LAT1 transporter expression[ref][ref]
  • A/G: increased LAT1 transporter expression
  • G/G: typical

Members: Your genotype for rs4240803 is .

 

APOE gene: 
The APOE E4 allele is linked to an increase in blood-brain barrier dysfunction and Alzheimer’s disease.[ref]

If you would like to know your APOE type, please see this article.

 


Lifehacks: Supporting the BBB

Decreasing inflammation:

Higher circulating inflammatory cytokines increase the permeability of the blood-brain barrier. Targeting inflammation with supplements such as resveratrol, curcumin, luteolin, or quercetin may help to reduce BBB dysfunction.[ref]

Resveratrol has specifically been studied in reference to reducing inflammatory cytokines and increasing the integrity of the blood-brain barrier.[ref]

Quercetin is a lipophilic molecule and can cross the blood-brain barrier. Studies on quercetin as a senolytic show that it, along with dasatinib, helps to preserve the BBB in aging animals.[ref]

Luteolin is another commonly used anti-inflammatory supplement. Studies in animals show that it helps to improve the expression of tight junction proteins in the BBB after strokes.[ref]

Nutritional support:

DHA and EPA:
Omega-3 fish oils with DHA and EPA may help to improve BBB function. Studies on damage after brain trauma show that increased DHA and EPA help to prevent the degeneration of tight junctions in the BBB.[ref]

Extra virgin olive oil:
A small clinical trial in mild Alzheimer’s patients showed that daily consumption of 30 mL of raw extra virgin olive oil decreases BBB dysfunction and improves cognition scores. The study notes that the consumption of extra virgin olive oil reduces the amyloid beta levels in the brain by increasing its clearance via the BBB. [ref] Note that this was a small study, and one of the authors is a shareholder in an olive oil company.

Caffeic acid phenethyl ester: 
Studies show that caffeic acid increases the BBB integrity by increasing claudin-5 levels.[ref] Caffeic acid phenethyl ester is abundant in bee propolis.

Carvacrol (oregano and thyme):
Carvacrol is a phenol found in thyme and oregano oil. Studies show that it can help to reduce BBB dysfunction after trauma by decreasing MMP9, which is the enzyme that breaks down the BBB.[ref]

Blood glucose levels:
Maintaining normal blood glucose levels is important. Both low blood glucose and high blood glucose increase the leakiness of the BBB.[ref]

Probiotics:

The gut microbiome affects the blood-brain barrier in several ways, and several studies have looked at whether the use of probiotics can affect the BBB.[ref]

  • A study in mice with Parkinson’s showed that a probiotic containing the microorganisms Lactobacillus fermentum LH01, Lactobacillus reuteri LH03, and Lactobacillus plantarum LH05 was able to reverse a leaky BBB.[ref]
  • Another study showed that the combination of Bifidobacterium lactis, Lactobacillus casei, Bifidobacterium bifidum, and Lactobacillus acidophilus helped to reduce cerebral LPS concentration and inflammatory cytokine levels in the brain.[ref]

Avoid lead: 

A study in mice showed that lead exposure (300 ppm in water) altered levels of OATP1C1 in the brain, leading to BBB dysfunction.[ref]

Therapies being researched for BBB dysfunction:

There’s a lot of research currently going on to mitigate BBB dysfunction, so this is an area to keep an eye on for current clinical trials and talk with your doctor about it if it is a concern for you.

Hyperbaric oxygen:
HBOT (hyperbaric oxygen therapy) is being explored for its role in the blood-brain barrier. Several studies after brain injuries, such as from surgery or stroke, show that it helps to preserve BBB function by reducing inflammation and oxidative stress.[ref] However, studies in animals show that in some situations, HBOT can increase BBB disruption.[ref]

Normobaric hyperoxia:
Researchers are investigating increasing oxygen at normal barometric pressure as a way to preserve the integrity of the BBB in stroke patients. This is easier to administer in the hospital through breathing in a higher concentration of oxygen.[ref]

WNT pathway drugs:
Researchers are actively researching molecules to boost the WNT signaling pathway as a way to help the BBB after an ischemic stroke.[ref]

Hormones impact ABCB1 levels:

Studies show that both progesterone and several forms of estrogen increase the number of ABCB1 transporters. This means that supplemental hormones (HRT) can upregulate ABCB1, which could impact an individual’s response to medications. Genetic variants matter here also. Some variants, such as rs2229109 G1199A (in the genotype report), have about twice the upregulation of ABCB1 in response to exogenous hormones applied topically. [ref]

Overcoming the BBB for drug efflux:

While supporting the BBB is generally what people focus on, there is also a lot of research into ways to get drugs into the brain and back out of the brain.

This type of research is important in brain cancer and for psychiatric medications. It may also be important for Alzheimer’s disease or Parkinson’s disease, in certain situations. For example, there is current research for disrupting the blood-brain barrier with focused ultrasound. ABCB1 inhibitors and autoantibodies are also being researched.[ref]

ABCB1 inhibitors include(partial list):[ref][ref – long list here][ref]

  • Cyclosporine
  • Certain antihistamines
  • Atorvastatin
  • Disulfiram
  • Tamoxifen
  • Tacrolimus/Sirolimus
  • Simvastatin
  • Quinine
  • Omeprazole
  • Fluoxetine

Natural supplements that inhibit ABCB1 a little bit include curcumin, rutin, and quercetin.[ref][ref]

Pulsed ultrasound:

Another way that researchers are increasing the permeability of the blood-brain barrier is through pulsed ultrasound with microbubbles. This causes a transient disruption of the BBB, allowing time for chemotherapy to enter the brain in patients with glioblastoma.[ref]

Recap of your genes:

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About the Author:
Debbie Moon is a biologist, engineer, author, and the founder of Genetic Lifehacks where she has helped thousands of members understand how to apply genetics to their diet, lifestyle, and health decisions. With more than 10 years of experience translating complex genetic research into practical health strategies, Debbie holds a BS in engineering from Colorado School of Mines and an MSc in biological sciences from Clemson University. She combines an engineering mindset with a biological systems approach to explain how genetic differences impact your optimal health.