Join Here   |   Log In

Atrial fibrillation: Intersection of genetic susceptibility with inflammation and remodeling

Key takeaways:
~ Atrial fibrillation is an irregular heartbeat in which the upper chambers of the heart have an irregular rhythm.
~ Structural changes in the heart muscle or changes in ion channels can increase the risk of atrial fibrillation.
~ Failure to resolve inflammation can lead to changes in heart tissue that make it susceptible to atrial fibrillation.
~ Genetic variants are strongly associated with an increased risk of AFib, especially when combined with inflammation or a triggering event.

Members will see their genotype report below, plus additional solutions in the Lifehacks section. Consider joining today

What happens in the heart when you have AFib?

Atrial fibrillation – often called AFib or a-fib – is an irregular or quivering heartbeat. It occurs when the upper chambers of the heart, the atria, start to beat out of sync with the lower chambers, the ventricles. This can be something that happens periodically for short periods of time, or it can be chronic.

Your normal heartbeat is controlled by an electrical signal that starts at the SA (sinoatrial) node, causes the upper chambers to contract, and then travels down the heart to cause the lower chambers to contract.

In A-Fib, an abnormal electrical signal in the atrium overwhelms the signal from the SA node. This causes the atrium to beat irregularly.[ref]

When the atria contract rapidly and in a disorganized manner, blood doesn’t move as effectively into the lower chambers, the ventricles. This can cause an irregular ventricular response, either slower or faster than normal.

Why is AFib a big deal?

People with atrial fibrillation have an increased risk of blood clots. Blood can pool in the atrium, increasing the risk of a blood clot. This clot can then travel through the veins and eventually cause a blockage somewhere.

For this reason, most people with chronic atrial fibrillation take blood thinners to prevent clots.

Atrial fibrillation is a complex topic. I’m presenting some of the newer research on why and how it happens, but please talk with your cardiologist for medical advice.

Risk Factors for Atrial Fibrillation:

General risk factors for AFib include:[ref][ref]

  • age
  • coronary artery disease, heart failure
  • mitral valve disease
  • high blood pressure
  • sick sinus syndrome
  • hyperthyroidism
  • alcoholism, smoking, stimulant drugs
  • certain medications
  • viral infections
  • diabetes, metabolic syndrome
  • COPD, sleep apnea, air pollution
  • heart surgery

These risk factors can influence the development of AFib in different ways. For example, someone who has had very high blood pressure for a long time may have an enlarged left ventricle, which changes the heart muscle tissue and the way the signal travels.

Chronic inflammation is also thought to play a causal role in atrial fibrillation. People with rheumatoid arthritis or psoriasis are at a 40% increased relative risk of atrial fibrillation. Both of these autoimmune diseases cause inflammation as well as abnormalities in the way that the electrical activation occurs in the atrium. Similarly, lupus, systemic sclerosis, IBD, and ankylosing spondylitis are also linked to an increased risk of AF due to structural or functional changes in the atrium. [ref]

Smoking, air pollution, vaping, and excessive alcohol use are all risk factors for AFib.[ref] All can increase oxidative stress.

Aging is another cause of chronically elevated inflammatory cytokines, which can lead to fibrosis of the heart tissue. As we age, there is an increase in senescent cells, which release inflammatory cytokines and affect surrounding tissue. This is likely why the risk of AFib increases significantly by the age of 80.

Sleep apnea also increases the risk of cardiac dysfunction, including atrial fibrillation. Sleep apnea causes periods of low oxygen and high CO2, which causes increased blood pressure and oxidative stress.[ref]

Obesity is also a risk factor for AFib. Recent research showed that: “atrial NLRP3 inflammasome is a key driver of obesity-induced atrial arrhythmogenesis”. NLRP3 is a gene that encodes the protein cryopyrin. It is a receptor protein that detects products of damaged cells and then sends a signal for inflammation to occur. This study showed that obese mice with the NLRP3 gene knocked out were not susceptible to AFib being induced, while normal obese mice were. The lack of NLRP3 prevented the electrical remodeling and the fibrosis in the heart.[ref]

Related article: NLRP3 genetic variants

Unresolved inflammation:

What causes the ion channel problems or structural issues that initiate AFib? Genetics is part of it, and I’ll cover the genes related to susceptibility in detail below.

The other half of the picture may be unresolved inflammation. Note that I say “may”. This is new research and more to learn, but I wanted to highlight it as a likely cause for many people.

Injury to the heart, myocarditis, viral infection, very high blood pressure,  cigarette smoking, air pollution, obesity, chronic autoimmune conditions…  all of these cause increased inflammatory cytokines in the heart muscle.

If the initial inflammatory signals aren’t resolved, fibrosis can occur in the heart muscle tissue. This remodeling of the heart muscle can be a cause of AF by changing the way the signal is conducted or changing the initiation of the signal from the autonomic nervous system.[ref]

How is inflammation resolved?

Resolution of inflammation is an active process that occurs in parallel with the initial inflammatory event. The key here is that the resolution of inflammation relies on pro-resolving lipid mediators derived from omega-3 fatty acids, DHA and EPA. The specific lipid mediators involved in the resolution of inflammation are resolvins, lipoxins, and maresins. These lipid mediators are both the “off switch” for inflammatory cytokines as well as the “on switch” for tissue healing processes and return to homeostasis.[ref]

Without returning the tissue to normal (without pro-resolving mediators), the heart tissue can be altered, or remodeled, into a substrate that is more likely to cause dysregulation of the heartbeat.

PMC9138906 – Excellent article on the failed resolution of inflammation as a cause of AF. Open access, CC 4.0. Please read.


Related article: Specialized pro-resolving mediators and the resolution of inflammation

When AFib continues to happen…

Lone AFib is a term used to describe the onset of atrial fibrillation without the usual risk factors, such as significant heart disease or being born with a congenital heart defect.

Persistent AFib is defined as episodes lasting longer than one week, and permanent AFib is defined as episodes lasting longer than one year.

People with persistent and permanent AFib have higher levels of inflammatory markers including IL-1B, IL-6, TNF-alpha, IL-8, C-reactive protein, and MPO (myeloperoxidase).[ref]

To get a little more specific, let’s look at TNF-alpha as an example. TNF-alpha is an inflammatory cytokine produced in response to pathogens and toxins. TNF receptors are expressed on cardiac myocytes and endothelial cells that line blood vessels. Increased TNF-alpha signaling has been shown to “promote atrial electrical, structural, and contractile remodeling, all of which are hallmarks of the molecular pathophysiology of AF.” In addition, elevated TNF-alpha levels have been shown in animal studies to promote atrial fibrosis, which slows and interrupts the conduction of the heartbeat signal.[ref]

Related article: Genetic variants that increase TNF-alpha

Mast cells are part of the immune response and release histamine, tryptase, and inflammatory cytokines in response to pathogens. Animal studies show that increased cardiac mast cells increase the risk of atrial fibrillation. Additionally, inflammation can prompt mast cells to release more inflammatory cytokines, which results eventually in fibrosis when inflammation isn’t resolved. The tryptase and chymase from mast cells are pro-fibrotic, leading to the accumulation of extracellular matrix in the tissue. However, mast cells can also signal for VEGF-A, which increases capillaries in damaged tissue and promotes repair.[ref]

PMC9334794 Role of cardiac mast cell in tissue remodeling

Digging deeper into genetic susceptibility:

Before we get into the specific genes, let’s talk about how the heart’s nerve cells work and how the genes that code for these mechanisms interact with your heartbeat.

Genetic studies over the past decade have provided much insight into the causes of AFib. A recent paper divides these genetic causes into three categories:[ref]

  • Ion channels and transporter genes: changes in how the heartbeat happens including the action potential duration, repolarization, and calcium ion movement
  • Transcription factors: changes to the left/right patterning when the heart was formed, ongoing changes in mRNA expression
  • Heart tissue structure genes: changes to cell-to-cell communication or myocardial structure

Ion channels:
Ion channels are proteins embedded in the cell membrane of all cells that move ions, such as sodium, potassium, or calcium, in and out of cells. In nerve cells, ions are an essential part of how the electrical impulse is formed and how the nerve fires. Ion movement is essential for cellular function throughout the body, especially in the heart.

Calcium ion channels are essential for driving the contraction and relaxation of the heart muscle, and calcium channels are also important in the generation of nerve impulses. [ref]

In addition, calcium ions in the cell can increase the production of electron donors used to make ATP. Heart muscle cells need a lot of ATP for energy, so good mitochondrial function is essential. However, it is a double-edged sword because mitochondria also produce ROS, which can lead to oxidative stress. The influx of calcium ions and the mitochondrial ROS response likely play a role in the initiation of AFib.[ref]

Structural changes:
Changes in the structure of the heart muscle are also a risk factor for developing AFib.

The muscle that makes up the heart, called the myocardium, is unique and different from skeletal muscle. The cells that make up the heart muscle are called cardiomyocytes. The rhythm of the heart’s contractions is set by pacemaker cells, which are a specialized type of cardiomyocyte in the sinus node.

Heart muscle cells are not replaced often and don’t regenerate well. Less than 1% of the cells turn over annually. Less than 1% of the cells are replaced each year. The heart grows by increasing the size of the cardiomyocytes. This occurs naturally as a person grows from childhood to adulthood, and the cardiomyocytes can increase in size even more with extensive exercise, heart disease, or heart injury. Excess growth in the cardiomyocytes can change the structure of the heart tissue.

How do genes affect the risk of developing atrial fibrillation?

Environmental and lifestyle factors, especially smoking or exposure to toxins, are important in the development of atrial fibrillation. However, genetic susceptibility explains why one person will end up with AFib while another doesn’t.

The PITX2 gene on chromosome 4 was one of the first genes identified to increase the risk of atrial fibrillation and has been studied extensively. The PITX2 gene is a transcription factor that regulates (turns on and off) genes involved in the development of the eyes, teeth, and abdominal organs of a fetus. During development, it is also important for the development of organs and body parts on the left and right sides, including the left-right asymmetry of the heart. Rare mutations in PITX2 cause congenital heart defects such as Tetralogy of Fallot.

While many early studies focused on the role of PITX2 during heart development, PITX2 continues to act as a transcription factor throughout life. It regulates the expression of the IL-6 receptor (tying into inflammation), CAV1, ZFHX3, and other many other genes and miRNAs related to AFib susceptibility and calcium ion handling.[ref]

A recent study looked at what happens to cardiomyocytes (heart muscle cells) when the PITX2 gene is deleted. The researchers found that without the PITX2 gene, the engineered heart tissue beats more slowly than normal. The mutations in PITX2 that cause familial atrial fibrillation are gain-of-function mutations in the PITX2 gene that increase the mRNA levels of the potassium and sodium channels involved in the electrical signal of the heartbeat. Studies in patients with atrial fibrillation show that either higher or lower PITX2 expression could be a cause.[ref]

The CAV1 gene encodes caveolin-1, which is involved in signal transduction in the atrium of the heart. Common genetic variants in CAV1 increase the relative risk of atrial fibrillation by increasing the susceptibility to the signal being altered.

Rare mutations that affect the formation of muscle cells are also linked to AFib. Titin is a protein in muscle cells that provides elasticity. The TTN gene encodes titin, and rare mutations in the TTN gene are linked to changes in the cardiomyocytes and an increased risk of atrial fibrillation. Similarly, rare mutations in the SYNP02L gene, which encodes a cytoskeletal heart protein, also is associated with atrial fibrillation.[ref]

Ion channel mutations, such as in sodium, potassium, or calcium channels in the heart are also linked to AFib.

Atrial Fibrillation Genotype Report

Members: Log in to see your data below.
Not a member? Join here.
Why is this section is now only for members? Here’s why…

Member Content:

  Log In

Why join Genetic Lifehacks?

~ Membership supports Genetic Lifehack's goal of explaining the latest health and genetics research.
~ It gives you access to the full article, including the Genotype and Lifehacks sections.
~ You'll see your genetic data in the articles and reports.

Join Here


Diet and lifestyle choices seem to play an important role in the outcome of atrial fibrillation, especially not smoking or drinking too much alcohol.

Talk with your doctor if you have any questions about atrial fibrillation. While the research-backed natural options are listed below, there are also prescription medications for prevention that your doctor can talk with you about.[ref]

Pro-resolving mediators:

Inflammation can play a causal role in AFib. What many people overlook is that the resolution of inflammation is an active process that relies on specialized pro-resolving lipid mediators. These pro-resolving mediators are synthesized from DHA and EPA, which are lacking in the modern diet.

Resolvin D1 is a pro-resolving mediator derived from DHA that is key in resolving inflammation in the heart. An animal study showed that supplemental resolvin D1 limited atrial fibrosis and the changes to the heart substrate that cause AFib.[ref]

DHA is an omega-3 fatty acid that is abundant in fish and seafood and can also be found in pasture-raised eggs and meat. Our modern diet has shifted to a greatly increased consumption of omega-6 fatty acids and a decreased consumption of DHA and EPA. The lack of pro-resolving mediators is likely at the heart of many chronic diseases and plays a role in AFib.

Full article on SPMs and the Resolution of Inflammation

Fish oil vs eating fish: 
Can you just pop a quick fish oil pill to cure AF?  Studies on fish oil supplements for people with a history of atrial fibrillation don’t show much in the way of benefits. This may be because oxidized fish oil in pills doesn’t have a beneficial effect. However, studies show that people who eat more broiled or baked fish have a lower incidence of AFib.[ref]

Quality is important if you are considering taking a fish oil supplement to increase your DHA and EPA. tests fish oil for heavy metals and oxidation. Their top picks include Carlson Maximum Omega and Kirkland (Costco) fish oil 1,000 mg. DEVA algae-based DHA-EPA also made the top pick list.  Failing the freshness test for oxidation were Wiley’s Finest Wild Alaskan Prenatal DHA and Jamieson Omega-3 complete.[ref]

Supplements and Vitamins:

Low magnesium levels are associated with an increased risk of atrial fibrillation, especially in patients undergoing heart surgery.[ref][ref] Magnesium sulfate, given via IV after heart surgery, decreases the incidence of AF.[ref]

Supplemental magnesium along with standard AFib medications has shown improved results, although not all studies agree.[ref] [ref]

According to, 600 – 800 mg/day in divided doses is recommended for magnesium supplements, but they caution to start slowly due to intestinal side effects. The site recommends testing magnesium levels first, and then either increasing magnesium-rich foods or supplementing with a low dose of magnesium.

There are many types of magnesium and some aren’t absorbed very well.  Learn more about magnesium types, absorption, and genetics here. is a free web app where you can track what you eat for a few days and see your average magnesium intake. Talk to your doctor if you’re not sure what you need or if you have questions about drug interactions.

Potassium is an essential ion for initiating heart muscle contractions. Low potassium levels from diuretic use may trigger arrhythmia in some people. Potassium is tightly regulated in the body, and both high and low levels are bad, and the right level of K is an integral part of heart health.

Talk with your doctor if you have heart problems before starting a potassium supplement, especially if you are on other medications.[ref]

Foods high in potassium include lentils, squash, kidney beans, orange juice, potatoes, milk, apricots, prunes, salmon, and bananas.[ref]

A study in older patients with heart disease found that CoQ10 supplements significantly reduced the risk of developing A-fib.[ref] Another study found that 150mg/day of CoQ10 before surgery cut the risk of postoperative atrial fibrillation in half.[ref]

Related article: CoQ10, genetics, mitochondria, statins

Antioxidants Supplements:

Since oxidative stress is a component of AF initiation, it makes sense that supplemental antioxidants might help in prevention.

A randomized placebo-controlled trial of n-acetylcysteine showed that it reduced the rate of AFib after heart surgery by half.[ref][ref] N-acetylcysteine (NAC) works by boosting your production of glutathione, a powerful intracellular antioxidant.

Vitamin C:
Ascorbic acid, or vitamin C, has been investigated in a number of clinical trials for the prevention of AFib. The majority of the clinical trials showed positive results for vitamin C in the prevention of AF. Most studies used 1 to 2 g per day.[ref] Foods containing vitamin C include citrus fruits, tomatoes, potatoes, red peppers, kiwi, strawberries, Brussels sprouts, and canteloupe.[ref]

Green tea and EGCG have been studied for reducing the risk of atrial fibrillation with quite a few studies showing positive results. An animal study showed that EGCG acted on inflammatory pathways as well as the pathways important in producing pro-resolving mediators. Another study pointed to EGCG as positively modifying calcium ion levels.[ref][ref]

Saffron extract was shown in a placebo-controlled trial to reduce the incidence of AFib after heart surgery.[ref] Animal studies show that saffron has a depressant effect on the AV node, likely through an interaction with nitric oxide.[ref]

Related article: Saffron studies

Adopting a healthy lifestyle:

How much of a difference do lifestyle changes make? An intervention study showed that diet and lifestyle factors play a role in controlling AFib. In the study, the intervention group received help with weight loss through a diet program and counseling, as well as additional follow-up visits with their cardiologist. The intervention group also received a sleep study and help with sleep apnea, smoking cessation help, and counseling for alcohol reduction. The control group received only the standard follow-up visit with the cardiologist and some written information on managing risk factors.

The results of this study showed that the intervention group had greater weight loss, lower blood pressure, better glycemic control, and fewer AFib symptoms. A subset of both groups also underwent catheter ablation, and the results showed that ~33% of the intervention group remained free of arrhythmia two years after ablation compared with 10% of the control group. [ref]

Reducing caffeine:

A meta-analysis of six studies that included over 200,000 participants found that reducing caffeine consumption very slightly reduced the risk of atrial fibrillation (6% reduction in relative risk).[ref] While the overall reduction was small, it may be worthwhile considering reducing caffeine if you consume a lot of it.

Related article: Caffeine sensitivity and your genes

Recap of your genes:


Related articles:

Cyp2C19 – check for genetic interactions with Clopidogrel

CYP2C19 – Metabolizing medications

Vitamin K genes influence warfarin dosages.

Vitamin K Genes: Bone strength, blood clots

About the Author:
Debbie Moon is the founder of Genetic Lifehacks. Fascinated by the connections between genes, diet, and health, her goal is to help you understand how to apply genetics to your diet and lifestyle decisions. Debbie has a BS in engineering from Colorado School of Mines and an MSc in biological sciences from Clemson University. Debbie combines an engineering mindset with a biological systems approach to help you understand how genetic differences impact your optimal health.