Mushrooms intolerance and your genes

Mushroom intolerance genes

I love mushrooms and can eat them in abundance. But I know a lot of people hate mushrooms – perhaps with a genetic reason…

The study, Mushroom intolerance: a novel diet-gene interaction in Crohn’s disease, was published in the British Journal of Nutrition in 2009. The study participants were a group of New Zealand Crohn’s patients and a control group without Crohn’s. The researchers were looking at the interaction between foods, disease symptoms, and genetics.

The top foods that were found to aggravate intestinal symptoms were corn and mushrooms. The researchers linked those who were intolerant of mushrooms to a genetic variant of the OCTN1 gene, which in previous studies had also been linked to an increased risk of Crohn’s disease.

The OCTN1 gene (now known as SLC22A4) codes for a transporter of organic cations, which means it moves solutes with a positive charge across the plasma membrane.  Specifically, SLC22A4 moves ergothioneine, which is found abundantly in mushrooms.

So what is ergothioneine?  It has been the subject of a bunch of research studies lately due to its antioxidant properties and potential role in helping cardiovascular disease.  Ergothioneine is produced by specific soil fungi and bacteria and then absorbed into some plants. Our main food source for it is mushrooms (white button, shitake, and oyster).  Other food sources include liver, black and red beans, and oat bran. [study]   It is interesting to note that in the Crohn’s study, other foods on the top offenders’ list included baked beans, chickpeas, and dried beans.

The variant of SLC22A4 that is linked to Crohn’s disease and, in the study referenced above, to mushroom intolerance for those with Crohn’s disease, causes a gain of function with a 50% increased transport of ergothioneine (ET).  While antioxidants are often thought of as only being beneficial, the study explains:  “high levels of ET might lead to an antioxidant overload in red blood cells or epithelium, leading to pro-oxidant effects and/or imbalance in immune reaction. An alternative possibility might involve effects on pro-inflammatory cytokines or heat shock protein 70”.

The SLC22A4 variant (rs1050152) is also referred to as the OCTN1 L503F variant.

Check your genetic data for rs1050152  (23andMe v4, v5; AncestryDNA):

  • T/T: gain of function, more likely to be intolerant of ergothioneine foods (mushrooms) with IBD
  • C/T: gain of function, more likely to be intolerant of ergothioneine foods (mushrooms) with IBD
  • C/C: normal

Note that mushroom intolerance was only correlated with the SLC22A4 variant in those with Crohn’s disease.  If you don’t have any intestinal problems, you may feel perfectly fine eating mushrooms.

I find it interesting that this SLC22A4 variant is associated with the risk of Crohn’s disease and ulcerative colitis in some populations, but not all.  It makes me wonder if the risk could be driven by the amount of ergothioneine in the diet either due to the popularity of mushrooms or due to local soil microbial content.

Originally published 06/2017. Updated 11/2019.

Author Information:   Debbie Moon
Debbie Moon is the founder of Genetic Lifehacks. She holds a Master of Science in Biological Sciences from Clemson University. Debbie is a science communicator who is passionate about explaining evidence-based health information. Her goal with Genetic Lifehacks is to bridge the gap between scientific research and the lay person's ability to utilize that information. To contact Debbie, visit the contact page.