Chronic Inflammation: Causes and Natural Solutions

Chronic inflammation causes most chronic diseases.

Let that sink in for a second…

If you have diabetes, arthritis, heart disease, gum disease, kidney disease, lupus, COPD, fatty liver disease, gout, asthma, major depressive disorder, PCOS, neurodegenerative diseases, or pretty much any chronic condition… an underlying cause is low-level, continuing inflammation.

While it may seem counterintuitive, this is actually pretty exciting news. Rather than taking pills to combat symptoms, by targeting the specific pathway causing the inflammation, you may be able to reverse and prevent chronic diseases.

This is a long article. Bookmark it; come back and re-read it; email it to yourself. Whatever it takes. Preventing or reversing the chronic diseases that kill us all…  well, this is important.

What causes chronic inflammation?

Inflammation sometimes seems like a nebulous boogeyman talked about on health blogs without any specifics.

A popular health website states that inflammation is caused by: “A poor diet, stress, minor food allergies, a sedentary lifestyle, and more can contribute to chronic inflammation.”[ref]

But, my ‘poor diet’ is different than yours… and ‘minor food allergies’ just sounds made up to me!

Let’s lay this out logically and try to find some answers.

I’m going to focus on lifestyle, food, and environmental factors that cause elevated levels of inflammatory cytokines. These are the things you can optimize right now to impact chronic inflammatory diseases, along with the genetic variants that you need to understand and work with.

The purpose of understanding chronic inflammation is to prevent and/or reverse chronic diseases. Every time you see ‘chronic disease’, replace it with whatever condition you’re dealing with (e.g., joint pain, gum disease) or whatever you plan to avoid getting (e.g., diabetes or heart disease that runs in your family).

According to the NIH, the causes of chronic inflammation are:[ref]

  • Environmental toxicants: chemicals we commonly encounter may alter the molecular pathways that underlie inflammation.
  • Alterations to the gut due to diet: Diets high in refined grains, alcohol, and processed foods can alter the gut microbiota and lead to intestinal and immune system changes.
  • Microbiome: An imbalance in the types of bacteria in the gut is linked to elevated inflammatory levels.
  • Circadian disruption, Stress: Artificial light at night, sleep disruptions, and psychosocial stress influence the immune system.
  • Early developmental conditions: Childhood obesity, psychological stress, exposure to microbes in infancy, and prenatal conditions are linked to inflammation later in life.

We are all unique in our kryptonite. Everyone has a different susceptibility level to chronic inflammation due to specific sources. Yes, I’m talking about genetics. Your genetic variants make you either more susceptible or more resilient to various environmental insults.

We’ll come back to your genetic variants in a minute. First, I’ll explain common reasons for inflammation to give you some background on what goes wrong in chronic inflammatory conditions.

What does your immune system have to do with inflammation?

Inflammation is one way that your immune system responds to several types of harm.

Throughout human history, the immune system has been protecting us from tons of different pathogens (bacteria, viruses, yeasts, and parasites). Prior to antibiotics, pathogens were the major cause of death. Our history as a species is molded by the pathogens we have lived through.

In general, the immune system responds to harmful stimuli, such as:[ref]

  1. pathogens (bacteria, viruses, fungi)
  2. tissue injury (wound, burn, injury, damage to cells)
  3. ionizing radiation (UV from the sun, x-rays)
  4. toxic compounds (man-made chemicals, alcohol, high blood glucose, heavy metals)
  5. psychological events (excitement) and physiological stress (marathon)

More on these in a minute…

Activating your immune system causes an inflammatory response, which has four components:

  • inflammatory inducers
  • sensors that detect the inflammatory inducers
  • inflammatory mediators induced by the sensors
  • target tissues affected by the inflammatory mediator.

This process looks different depending on what initiates the inflammatory response.

Example: When encountering a bacterial pathogen (inducer), the sensors are toll-like receptors on immune cells. The immune cells then express inflammatory mediators (TFN-alpha, IL-1, IL6, histamine, prostaglandins, etc.). The inflammatory mediators act on the target tissue, such as inducing vasodilation or recruiting white blood cells (neutrophils).[ref]

Different pathogens or toxins may induce different inflammatory mediators. For example, viral infections (inducers) prompt the release of interferon (mediator) from natural killer cells and T cells (sensors). Interferon then can interfere with viral replication or cause B cells (target) to produce antibodies.[ref]

Here’s a graphical overview of what activates the immune response (I’ll add to this graphic as we go along).

Activators of the immune response


Let’s take a look at these inflammation activators in more detail:

1) Pathogens:

Our body has generalized ways of recognizing a ‘bad guy’ pathogen and initiating an immediate reaction. This initial response isn’t specific to a particular bacterial strain or virus — just a quick reaction to the detection of something likely ‘bad’.[ref]

  • Bacteria with lipopolysaccharides (LPS) on the outer membrane trigger a specific response.
  • Viruses trigger a different specific response based on recognition by PAMPs (pathogen-associated molecular patterns)
  • The inflammatory response aims to protect the host from infection and then induce an adaptive immune response (e.g., make antibodies).

2) Tissue injury (burn, frostbite, injury, foreign body, trauma):

Inflammation is also caused by rupturing a cell membrane. This rupture could be due to a cut, bone break, crush wound, burn, or frostbite.

Anything that ruptures a cell causes the leakage of molecules in the cytosol of the cell – and some of the molecules trigger a ‘damage’ signal.

Essentially, the stuff inside a cell shouldn’t be found outside the cell.

Detection of DAMPs (damage-associated molecular patterns) triggers some of the same cascade of inflammatory events that detecting a pathogen – PAMPs – triggers. (Alarmin is another term used in research for DAMPs.)

The signals that activate DAMPs include:[ref][ref]

  • molecules, such as ATP, released from dying cells
  • breakdown products from the extracellular matrix
  • products of proteolytic cascade released in vascular damage.

Tissue damage is detected by macrophages (a type of white blood cell) and by pain receptors. Toll-like receptors recognize some of the different molecules and then activate the immune response.

3) Damage from ionizing radiation:

X-rays, background atmospheric radiation, and radon gas are sources of ionizing radiation. Obviously, we are all exposed to some background radiation constantly, and the body is made for handling this.

Ionizing radiation releases energy in a way that is powerful enough to break chemical bonds. It can cause tissue damage, especially at higher levels.

At low levels, the problem with ionizing radiation is that it causes breaks in DNA strands. If the breaks aren’t repaired – or if they are repaired improperly – DNA sequence changes (mutations) can result, which could cause cancer.[ref]

Similar to DAMPs (damage-associated molecular patterns), when DNA is broken, a DNA damage response is activated. If the DNA damage is extensive, the cell should undergo apoptosis (cell death), which causes activation of the inflammatory system.[ref]

At low doses, ionizing radiation can upregulate inflammatory markers. It’s a fine balance, though. Really, really low doses of radiation prompt just enough response to have an overall anti-inflammatory effect.[ref][ref]

4) Toxic compounds:

Both endogenous (made in the body) and exogenous (from outside) compounds can be toxic or harmful and trigger an inflammatory response.

Examples include:

  • high blood glucose levels
  • oxidized fats, such as omega-6 fatty acids that are easily oxidized
  • toxins (pesticides, plastics, flame retardants, VOCs, etc.)
  • chemical irritants (fluoride, nickel, other trace elements)

High blood glucose:
Research shows that acutely raising blood glucose for several hours causes inflammatory cytokine (IL-6, TNF-alpha, and IL-18) levels to rise within two hours. The inflammatory cytokine levels returned to normal as blood glucose levels returned to baseline.[ref] While pre-diabetes may sound innocuous, the elevation in blood glucose causes a continual elevation in inflammatory markers.[ref]

Oxidized omega-6 fatty acids:
Over the past 70 years, one significant dietary change has been the increased consumption of omega-6 oils (corn, soybean, canola oil). It has been a huge shift away from what our ancestors ate. The omega-6 oils are easily oxidized, and the oxidized fatty acids trigger macrophages (white blood cells) which release inflammatory cytokines. While these omega-6 oils are labeled ‘heart healthy’ because they reduce LDL cholesterol, new research shows a different story. A British Medical Journal article concludes: “In summary, numerous lines of evidence show that the omega-6 polyunsaturated fat linoleic acid promotes oxidative stress, oxidised LDL, chronic low-grade inflammation and atherosclerosis, and is likely a major dietary culprit for causing CHD, especially when consumed in the form of industrial seed oils commonly referred to as ‘vegetable oils’.”[ref]

Chemical toxin exposure:
This topic is enormous, and many volumes could be written about it. Let me give you just one concrete example (with more in the following sections). Volatile organic compounds (VOCs) are released from many building materials, including paint, new furniture, perfumes, and petroleum products. Serum inflammatory cytokine levels (IL8, IL13, IL6, IL4, TNF-alpha) rise in conjunction with indoor VOC exposure.[ref]

Exposure to certain metals can trigger an inflammatory response in some people. For example, nickel is a common culprit in people with allergic dermatitis. Research shows that exposure to nickel increases TNF-α, IFN-γ, IL-4, and IL-13.[ref] Another example is titanium dental implants. Inflammation can increase due to interactions with toll-like receptors and titanian ions. Fluoride interacts with the titanium causing the release of titanium ions.[ref]

5) Psychological and physiological causes of inflammation:

Inflammatory markers elevate during stressful situations – and situations of “emotional attention”. It is one cause of depression.[ref] This seems to be a feedback loop. An increase in inflammatory cytokines is linked to an increase in emotional attention via the direct stimulation of cortisol and ACTH from cytokine signaling.[ref]

Excessive exercise:
Endurance exercise, such as marathon running, causes increases in IL1, IL6, and IL8 for hours after exercise.[ref]


Here’s where we are so far:

Causes of Immune System Activation

What goes wrong to cause chronic, low-grade inflammation?

Theoretically, the immune system responds strongly to harmful stimuli (germs, wounds, toxic compounds, radiation), and then the system for the resolution of inflammation kicks in to bring everything back to normal.

I have another (long) article on the resolution of inflammation. In a nutshell, the resolution of inflammation is an active process that decreases inflammatory cytokine production alongside promoting healing processes (e.g., stem cells for repairing tissue).

The processes for resolving inflammation hinge on the formation of pro-resolving lipid mediators, which utilize DHA and EPA for biosynthesis.

At least half the picture in chronic inflammation is the lack of resolution of inflammation.

The other part of the picture here is continued exposure to harmful stimuli.

In my mind, it is an equation that looks like this:

One study puts it: “If the inflammatory trigger is not eliminated by the acute inflammatory response or persists for any other reason, the resolution phase may not be appropriately induced and a chronic inflammatory state may ensue. This state can be caused by chronic infections, unrepaired tissue damage, persistent allergens, undigestable foreign particles, or endogenous crystals, such as monosodium urate.”[ref]

As we talk about chronic inflammation, keep in mind that inflammatory cytokines can provoke cell death. While cell death occurs all the time in the body as cells reach the end of their replicative life, the type of cell death caused by inflammation is damaging. Cell death needs to be regulated — excessive cell death isn’t good.[ref][ref]


Low-grade inflammation that lingers = chronic inflammation.


Let’s dive into the continued exposure to harmful stimuli part of the equation…

How can pathogens cause chronic inflammation?

Sometimes the immune system doesn’t clear out an infectious pathogen. The pathogen lingers at low levels, causing tissue-specific inflammation.

Here are several examples:

  • P. gingivalis is a source of chronic inflammation in the gums (gingivitis). It also can travel in the bloodstream from your bleeding gums and is found in atherosclerotic plaque (linking it to heart disease).[ref]
  • Epstein-Barr virus remains in the body for a lifetime. For most people, it is latent and does not cause problems. Some people, though, have a reactivation of the virus. It can be a cause of chronic fatigue[ref] and was recently linked to multiple sclerosis.[ref]
  • Lyme disease is a tick-borne illness that can result in long-term, chronic inflammation for some people.
  • Propionibacterium acnes is one skin bacteria that is linked to acne (a chronic inflammatory condition). But researchers have also found that Propionibacterium acnes may literally be at the heart of back pain (another chronic inflammatory condition). In a study on patients undergoing surgery for disc herniation, the researchers found that 44% of disc samples contained colonizing bacteria. P. acnes was the most common culprit by far. The bacteria formed a biofilm within the disc matrix and may be the source of inflammation in back pain for some people.[ref]

The gut microbiome and chronic inflammation:

Your intestinal barrier is amazing. It is a multilayer of defense to keep out pathogens, while simultaneously allowing for the absorption of water and nutrients.

Lining the epithelial cells of the intestines is a mucosal barrier. When the mucosal barrier is breached, and pathogens attack endothelial cells, there is an immediate and localized inflammatory response. Ideally, the immune system takes care of the pathogen, and the resolution of inflammation processes will return the cells to normal. But when too much damage or chronic barrier damage occurs, the inflammatory response becomes systemic. Too much immune response in intestinal endothelial cells can lead to further intestinal permeability, more pathogen and food protein infiltration, and chronic inflammation.[ref]

Another cause of chronic inflammation in the intestines is an overgrowth of ‘bad’ bacteria. One example of this is an infection with C. difficile. A C. diff infection causes direct injury to the cells lining the intestines. It causes the release of inflammatory cytokines, which, when overactive, cause further damage to intestinal cells.[ref]

Certain gut microbes also can stimulate inflammatory cytokine production. For example, Candida albicans and certain Bacteroides species are linked with higher levels of IL1B, IL6, and TNF-alpha.[ref]

Continued exposure to toxins:

I’m going to hit the highlights here to illustrate the point that different environmental toxins increase specific inflammatory cytokines in an individual manner.

Methylmercury exposure at low levels increases inflammatory cytokines.[ref] Methylmercury is formed by microbes in aquatic systems, which is why eating fish is a large source of methylmercury exposure. Industrial pollution can also be a source of methylmercury.

Methylmercury increases TNF-alpha expression. While methylmercury can accumulate in various tissues, the highest levels of TNF-alpha caused by methylmercury were found in the brain. It may be why mercury selectively damages neuronal tissue (via high TNF-alpha).[ref]

Exposure to lead in drinking water increases inflammatory cytokines.[ref] Lead can be absorbed and stored in various organs. This storage can cause issues later in life, such as during kidney dialysis. People undergoing dialysis are at a significantly increased risk of carpal tunnel syndrome, an inflammatory condition. Dialysis can concentrate lead that is being excreted. It increases lead levels, and the increase in inflammation causes carpal tunnel syndrome.[ref]

Higher blood levels of lead, cadmium, and arsenic are directly associated with higher TNF-alpha levels.[ref]

Air pollution:
Breathing in urban air inevitably means taking in fine particulate matter. Urban air pollution causes the lungs to release inflammatory cytokines, including IL-6.[ref]

Exposure to pesticide residue on fruits and vegetables is almost unavoidable in our modern world and a continual, small source of inflammation. For example, neonicotinoid pesticide residue is found on commonly consumed foods such as cherries, apples, pears, strawberries, cauliflower, cilantro, grapes, and leafy greens. Sometimes even in products labeled as organic.[ref] Exposure to neonicotinoids increases pro-inflammatory cytokines such as TNF-α, IL-1β, IL-6, IL-12, and IFN-γ.[ref]

Do you need to avoid all types of pesticides? Some people may be more affected by specific types of pesticides than others. Genetic variants are linked to increased negative effects of specific pesticides. I have free articles available explaining the specific variants associated with the following types of pesticides:

While your first thought for arsenic may be as a poison used in mystery novels, arsenic is actually naturally occurring in groundwater in locations around the world. In high doses, arsenic kills everyone. At low-dose exposure through groundwater, arsenic detoxification uses up glutathione, which raises oxidative stress in cells. The increase in oxidative stress leads to chronic inflammation.

Related article: Arsenic detoxification genes

Uric acid:
Not all toxins come from outside the body. A byproduct of metabolizing purines (nucleic acids) is the creation of uric acid. Normally, uric acid is excreted in the urine.

Excessive uric acid can create urate crystals that deposit in different tissues (such as in the big toe in gout). However, uric acid is one of those danger-associated molecular patterns (DAMPs) that trigger an immune response.[ref]

What causes excess uric acid formation? A big reason for this excess in our modern diet is fructose. When high levels of fructose are consumed quickly (e.g., drinking a soda), the liver produces uric acid.[ref]

Related article: Uric acid genes

BPA and phthalates are two chemicals released from plastics and other products.

A study (in female mice) found that BPA at human-relevant doses increased inflammatory cytokines in the heart. When coupled with a viral infection, this increase increases the rate of myocarditis.[ref]

Related articles: BPA detoxification genes  and Phthalate detoxification

Quinolone antibiotics as an environmental contaminant:
Antibiotics are used in huge amounts in conventional meat production. Environmental contamination (e.g., in the water supply or the soil as contamination from manure) means that we are exposed to low residual levels of quinolone antibiotics all the time. A recent study found that at environmental residual levels, quinolone antibiotics cause the increased secretion of pro-inflammatory cytokines.[ref]

Age-related chronic inflammation:

Chronic, low-level inflammation increases as we age.

When a cell reaches the end of its replicative ability, it goes into a state called senescence. Cellular senescence happens throughout life, and senescent cells are eventually removed via the immune system. In order to alert the immune system that they need to be removed, senescent cells secrete pro-inflammatory signals.

As we age, we end up with more senescent cells than the body can get rid of. Thus, we end up with cells that give off inflammatory cytokines, which then cause surrounding cells to become damaged.

Some researchers refer to this excess of inflammation due to senescent cell buildup in aging as “inflammaging”. Essentially, too many senescent cells cause chronic, low-grade inflammation in aging.[ref]

Related article: Senescence and telomeres

The second source of chronic inflammation in aging is due to glycosylated proteins, which are proteins that have been permanently altered. One source is advanced glycation end-products (AGEs), which build up in aging.[ref]

Related article: Advanced glycation end products

Radiation exposure:

You may think you don’t have to worry about radiation… as long as a nuclear bomb doesn’t go off or a nuclear plant doesn’t melt down.

But the second leading cause of lung cancer (after cigarettes) is radon exposure. Radon is a radioactive chemical found naturally in the environment in small amounts. It is gaseous and comes from the ground in varying amounts depending on geography. If you have radon in your area, radon test kits and meters are available to monitor the levels in your home.

Some people are better than others at mitigating the effects of radon. Certain genetic variants increase the risk of lung cancer from radon by 3-fold.[ref]

High levels of ROS: Oxidative Stress, Inflammation, Cell Death

Reactive oxygen species (ROS) are the byproducts of oxygen metabolism. All of your cells create a little ROS when creating energy in the mitochondria. And normal amounts of ROS are necessary and used for cell signaling.

Examples of ROS include hydrogen peroxide, superoxide, and hydroxyl radicals. All of these play a normal role in cell function when at low amounts.

The body’s natural antioxidant system prevents excesses… or at least it is supposed to. A decreased ability to form endogenous antioxidants (glutathione, superoxide dismutase, or catalase) can result in excess ROS. Genetics and nutrition both play a significant role in your cells’ ability to produce these essential antioxidants.

Excessive ROS production and/ or not enough antioxidants lead to oxidative stress. (I often think of oxidative stress as similar to iron rusting when left outside or an apple turning brown when exposed to the air — the same type of oxidation process.)

Important here: Oxidative stress leads directly to inflammatory cytokine creation in the cells. As one research paper puts it: “…oxidative stress can lead to chronic inflammation, which in turn could mediate most chronic diseases including cancer, diabetes, cardiovascular, neurological and pulmonary diseases.”[ref]

Exposure to cigarette smoke, pollution, and heavy metals can cause oxidative stress in cells when the natural antioxidant system is overwhelmed. Excess ROS (oxidative stress) can cause DNA damage, which then triggers the activation of inflammatory pathways.

At first glance, this may seem like just another way that toxins cause chronic inflammation. But oxidative stress is also caused by radiation, high blood glucose, alcohol, and too much iron. Additionally, sources of chronic inflammation, such as obesity, atherosclerosis, and cancer, can also increase oxidative stress in cells. All of this triggers the activation of inflammatory pathways — and then certain immune system cells also create ROS as a way to create apoptosis. It is like a positive feedback loop with inflammation-causing ROS and then excessive ROS causing more inflammation.[ref]

Sleep deprivation, ROS in the intestines, early death

Did you know that you can go longer without food than without sleep? All animals sleep, and sleep deprivation will kill any animal after a certain amount of time. But why?

Researchers did a bunch of experiments using model animals to determine which systems in the body were most affected in the body by lack of sleep. During sleep, cells repair. It was theorized that without sleep, cells in the brain would have increased oxidative stress, which would result in brain cell death.[ref]

But that isn’t what the researchers found. It turns out that with sleep loss, increased ROS in the gut causes oxidative stress and inflammation in the intestinal cells.

The good news here is that stopping the sleep loss eventually reversed the oxidative stress, and the previously sleep-deprived animals would live just as long as normal.

But wait, there’s more…

The other fascinating finding in the study was that feeding the animals antioxidants both reversed the buildup of ROS in the intestines. The animals given certain antioxidants (melatonin, lipoic acid, or NAC) survived a normal lifespan, even with severe sleep deprivation.[ref]


Here’s where we are now:

Continual exposure to harmful stimuli along with a lack of pro-resolving mediators causes chronic inflammation.

Naming Names: What do the specific inflammatory cytokines do?

I keep mentioning inflammatory cytokines, such as TNF-alpha and IL-6, without fully explaining them.

Cytokines are small proteins that act as signaling molecules. There are a bunch of different inflammatory cytokines, and they are released from different types of immune cells, like macrophages, mast cells, and T cells.

As signaling molecules, they attach to receptors on cell membranes and cause a cascade of events to occur within a cell. While each cytokine and receptor combination causes a unique set of events to occur, in general, cytokines cause cells to upregulate inflammatory genes.

When you read about cytokines, you may think that several of them do pretty much the same thing. There does seem to be a lot of redundancy in this system — which is good since you rely on cytokines for fighting off pathogens on an ongoing basis.

On the other hand, the excessive inflammatory response has a negative effect on tissue function and can cause overt tissue damage.

To sum up: cytokines are released by immune cells, attach to surface receptors on other cells, and cause the cell to produce an inflammatory response.

Summary of cytokines and their functions (CC source).[ref]

I’ll cover a number of these cytokines below in the genetic variants section.

Inflammatory proteins and enzymes:

Acute inflammatory proteins can be a marker of inflammation in the body. These inflammatory proteins include C-reactive protein (CRP), fibrinogen, haptoglobin, and serum amyloid A. During trauma, stress, or infection, these inflammatory proteins are elevated and try to restore the body or tissue back to normal.[ref]

Related articles: C-Reactive Protein Genes, Fibrinogen

Amplifying the signal: HMGB1

HMGB1 is a multipurpose protein. Normally, it resides in the cell nucleus and helps to organize DNA for transcription. But when there is a pathogen or high levels of ROS, HMGB1 moves into the cytosol of the cell. It can act to activate a feedback loop that increases the production of several inflammatory cytokines.[ref]

Related article: HMGB1 Gene and Inflammatory Response

NLRP3 Inflammasome:

Another way to ramp up the inflammatory response system is through activation of NLRP3.

Exposure to environmental toxicants can result in organ damage or autoimmune diseases. “The exaggerated activation of the NLRP3 inflammasome and its end product IL-1β, is responsible for the pathogenesis caused by many ETs including pesticides, organic pollutants, heavy metals, and crystalline compounds.”[ref]

Naming names on what activates NLRP3: Paraquat (herbicide), rotenone (pesticide), chlorpyrifos (organophosphate pesticide), phthalates (plasticizers), cadmium, chromium, mercury,  nickel (e.g., from jewelry and clothing buttons), silica, and asbestos.

High homocysteine levels activate the NLRP3 inflammasome. (I’ll come back to this in the genetics section with MTHFR and the lifehacks section with folate.)[ref]

Inflammation Genotype Report:

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Membership lets you see your data right in each article and also gives you access to the members’ only information in the Lifehacks sections.

Pros and Cons of Increased Inflammation:
Genetic variants in inflammation-related genes can cause you to be more prone to chronic inflammation. The flip-side is that a genetic upregulation of an inflammatory cytokine may help you fight off a pathogen better or destroy a cancerous cell.

Superpowers for killing off the plague = risk of chronic inflammation

It is easy to think that an inflammatory gene is ‘bad’, but you also want your immune system ready to react to a pathogen. The key: understand which genetic variants may be more active for you and then target them when appropriate. You may not want to constantly tamp down the immune response, which is important for fighting viruses and targeting cancer cells.

Cherry Picking:
I admit it. I’m only including what I think are the most impactful variants for each of the genes below. This topic is huge, so I decided to only hit the highlights here.


Inflammatory Cytokine Variants:

TNF gene (Tumor necrosis factor-alpha):
TNF-alpha is important to have in the right amounts. It helps the body destroy cells with aberrant DNA, but too much TNF is implicated in many chronic diseases. TNF-α is stimulated by bacterial endotoxin (lipopolysaccharide) as well as other pathogens. It is one of the body’s primary mediators in protection against bacteria and viruses. (Full article on TNF)

Check your genetic data for rs1800629 -308A/G (23andMe v4, v5; AncestryDNA):

  • A/A: Higher TNF-alpha levels.[ref][ref][ref][ref], greater fatigue levels[ref] heightened inflammatory response to heavy metals[ref] Increased risk of: ulcerative colitis[ref] celiac disease[ref] (note – must have HLA type also), septic shock[ref], diabetic foot ulcers[ref], asthma[ref], Hashimoto’s thyroiditis[ref], skin infections[ref], periodontitis[ref], asthma[ref] in children, COPD[ref], stroke[ref], gum disease[ref], heart disease[ref]; nasal polyps[ref] 3 to 4-fold increase in acne/severe acne risk.[ref][ref]
  • A/G: higher TNF-alpha levels, greater fatigue levels, and somewhat higher risk of most of the above
  • G/G: typical

Members: Your genotype for rs1800629 is .

Check your genetic data for rs361525 -238A/G (23andMe v4, v5; AncestryDNA):

  • A/A: higher TNF-alpha levels[ref], increased risk of psoriasis[ref], asthma[ref], COPD[ref], periodontitis[ref] greater severity in cystic fibrosis[ref]
  • A/G: somewhat higher TNF-alpha levels
  • G/G: typical

Members: Your genotype for rs361525 is .


IL8 gene: Interleukin 8 is an essential regulator of the inflammatory response.

Check your genetic data for rs4073 (23andMe v4, v5; AncestryDNA):

  • A/A: increased IL8, somewhat increased risk of periodontitis[ref], increased risk of gastritis[ref], increased risk of Alzheimer’s (Asians)[ref, increased risk of diabetic nephropathy[ref]
  • A/T: probably normal risk of periodontitis[ref]
  • T/T: typical

Members: Your genotype for rs4073 is .


IL-6 gene: Interleukin 6 acts both as an inflammatory cytokine and as an anti-inflammatory signal.

Check your genetic data for rs1800795 (23andMe v4, v5; AncestryDNA):

  • G/G: higher risk of gingivitis (most common allele in many population groups)[ref][ref] increased cancer risk (Asian populations)[ref] osteoarthritis[ref]
  • C/G: typical risk of gingivitis
  • C/C: lower risk of gingivitis (good!)

Members: Your genotype for rs1800795 is .


IL1B gene: encodes the interleukin 1 beta cytokine

Check your genetic data for rs16944 (23andMe v4, v5):

  • A/A: increased risk of septic shock[ref], increased risk of osteoarthritis, RA[ref]; increased risk of GERD[ref]
  • A/G: typical risk
  • G/G: typical risk

Members: Your genotype for rs16944 is .

Check your genetic data for rs1143634 (23andMe v4, v5; AncestryDNA):

  • A/A: increased risk of gingivitis[ref][ref][ref]
  • A/G: increased risk of gingivitis
  • G/G: typical

Members: Your genotype for rs1143634 is .


IL1A gene (Interleukin 1) Interleukin 1 is another inflammatory cytokine produced by lymphocytes or monocytes and released in response to endotoxins.

Check your genetic data for rs1800587 (23andMe v4, v5; AncestryDNA):

  • A/A: increased IL1A[ref]; increased risk of gingivitis[ref], increased risk of periodontitis[ref], significantly increased risk of sudden sensorineural hearing loss[ref], increased risk of tinnitus[ref], increased risk of acne, especially with dietary triggers[ref][ref]
  • A/G: increased risk of gingivitis, hearing loss, acne
  • G/G: typical

Members: Your genotype for rs1800587 is .



IL10 gene:
The IL10 gene codes for the anti-inflammatory cytokine IL-10 (interleukin-10). Variants causing a decrease in the amount of IL10 are, therefore, associated with increased inflammation. In contrast, variants that cause an increase in IL10 are associated with less inflammation.

Check your genetic data for rs1800896 (23andMe v4, v5; AncestryDNA):

  • T/T: Common genotype, more likely to have gum disease, increased risk of cirrhosis[ref]
  • C/T:  more likely to have gum disease
  • C/C: Higher IL-10, less likely to have gum disease (good)[ref]

Members: Your genotype for rs1800896 is .


NLRP3 gene (CIAS1): encodes the NLRP3 protein

Check your genetic data for rs35829419 Q705K (23andMe v4; AncestryDNA):

  • A/A: Significantly increased susceptibility to leprosy, colorectal cancer, HIV-1 infection, rheumatoid arthritis, abdominal aortic aneurysms, inflammatory bowel disease, ulcerative colitis, and atopic dermatitis[ref] higher blood glucose levels after glycemic load[ref] higher disease activity in RA[ref];
  • A/C: increased susceptibility to leprosy, colorectal cancer, HIV-1 infection, rheumatoid arthritis, abdominal aortic aneurysms, inflammatory bowel disease, ulcerative colitis, and atopic dermatitis; higher blood glucose after glycemic load
  • C/C: typical

Members: Your genotype for rs35829419 is . (If you don’t see your 23andMe v4 data for this one, check it on 23andMe. It doesn’t show up in some downloaded data sets.)


HMGB1 gene codes for the HMGB1 protein.

Check your genetic data for rs1045411 (23andMe v5; AncestryDNA):

    • C/C: typical
    • C/T: increased sepsis risk, higher HMGB1 levels in infection; increase in relative risk of cancer
    • T/T: increased sepsis risk, higher HMGB1 levels in infection[ref]; increase in relative risk of cancer[ref]; greater inflammatory response[ref]

Members: Your genotype for rs1045411 is .


INFG gene: interferon-gamma is part of the innate defense against viral pathogens.

Check your genetic data for rs2430561 +874T>A (23andMe v5; AncestryDNA):

  • T/T: more common genotype;
  • A/T: higher interferon-gamma producers; increased fatigue and sickness behavior
  • A/A: higher interferon-gamma producers[ref] increase inflammatory[ref] increased risk of fatigue or sickness behavior[ref] increased risk of periodontal disease and rheumatoid arthritis[ref]

Members: Your genotype for rs2430561 is .


Detoxification Genetic Variants:

Big picture here:

  1. Poor detoxification combined with high exposure to toxicants creates oxidative stress in cells.
  2. Oxidative stress increases inflammatory cytokine production, resulting in chronic inflammation.

MTHFR gene: encodes an important enzyme in the methylation cycle. Methyl groups are used in the detoxification of several substances, including arsenic and mercury.[ref][ref] MTHFR variants decrease the production of methyl groups (when folate is limited in the diet). The MTHFR variant is also linked to higher homocysteine levels, especially for people lacking folate in their diets.[ref ][ref ][ref ] Additionally, MTHFR variants are linked to mood disorders and hypertension.[ref][ref][ref][ref][ref][ref ]

Check your genetic data for rs1801133 (23andMe v4, v5; AncestryDNA):

  • G/G: typical
  • A/G: one copy of MTHFR C677T allele, enzyme function decreased by 40%
  • A/A: two copies of MTHFR C677T, enzyme function decreased by 70 – 80%

Members: Your genotype for rs1801133 is .


GSTM1 enzyme: The GSTM1 (glutathione S-transferase mu 1) enzyme helps the body detoxify several types of carcinogens, drugs, toxins, and oxidative stress byproducts.

Not everyone has a functioning copy of this gene, and the non-functioning (null) genotype shows links to cancer susceptibility.[ref] The deletion is fairly common, with  50 – 78% of people, depending on ethnic group, having the null genotype for GSTM1.

Check your genetic data for rs366631 (23andMe v4 only):

  • A/A: deletion (null) GSTM1 gene. 2x increased risk of breast cancer[ref],  increased susceptibility to lung cancer in smokers[ref], increased risk of prostate cancer in Caucasians[ref], increased risk of lung cancer from radon[ref]
  • A/G: GSTM1 present
  • G/G: GSTM1 present

Members: Your genotype for rs366631 is .


GSTO1 gene: encodes a glutathione-S-transferase enzyme, which is essential in getting rid of arsenic.[ref] Additionally, it plays a role in neutralizing oxidative stress.[ref]

Check your genetic data for rs4925 (23andMe v5; AncestryDNA):

  • C/C: typical (most common);
  • A/C:  decreased enzyme activity; increased problems with arsenic poisoning[ref]; decreased excretion of arsenic in urine[ref] increased risk of PCOS
  • A/A:  increased skin lesions in arsenic poisoning; decreased excretion of arsenic in urine[ref]; increased risk of PCOS[ref]

Members: Your genotype for rs4925 is .


GSTA1 gene: encodes a glutathione S-transferase enzyme important in reducing oxidative stress.

Check your genetic data for rs3957357 (23andMe v4, v5; AncestryDNA):

  • A/A: GSTA1*B, low/ non-functioning enzyme; increased relative risk of psychiatric illness[ref]
  • A/G: GSTA1*A/*B, somewhat lower enzyme function.
  • G/G: GSTA1*A

Members: Your genotype for rs3957357 is .


NFE2L2 (Nrf2) gene: The Nrf2 (Nuclear factor erythroid 2–related factor) signaling pathway regulates the expression of antioxidants and phase II detoxification enzymes. The Nrf2 pathway is important for clearing out many toxicants, including those found in cigarette smoke.

Check your genetic data for rs6721961 (23andMe v4):

  • G/G: typical
  • G/T: somewhat diminished Nrf2 expression; more likely to have sperm damage (male infertility) with smoking[ref], increased arterial stiffness in aging, and increased risk of CVD[ref]
  • T/T: significantly diminished Nrf2 expression, increased risk of lung cancer[ref] 5X more likely to have sperm damage (male infertility) with smoking[ref], increased arterial stiffness in aging, and increased risk of CVD[ref]

Members: Your genotype for rs6721961 is .


AS3MT gene (arsenic):  The AS3MT (Arsenite methyltransferase) enzyme is an S-adenosylmethionine (SAMe) dependent enzyme that adds a methyl group in the conversion of arsenic for excretion.

Check your genetic data for rs11191439 M287T (23andMe v5, AncestryDNA):

  • C/C: arsenic is more harmful[ref]
  • C/T: arsenic is more harmful
  • T/T: typical

Members: Your genotype for rs11191439 is .


NQO1 gene (benzene, oxidative stress): The NQO1  gene codes for the enzyme NAD(P)H: quinone oxidoreductase 1 enzyme. This enzyme uses NADH or NADPH to reduce quinones to hydroquinones.

Check your genetic data for rs1800566 P187S (23andMe v4, v5; AncestryDNA):

  • A/A:  NQO1 *2 – non-functioning NQO1, higher risk of cancer from benzene[ref], increased risk of lung cancer in smokers[ref], increased risk of Parkinson’s from pesticide exposure[ref], increased risk of cataracts for outdoor workers[ref]
  • A/G: intermediate enzyme function, higher risk of cancer from benzene, increased risk of Parkinson’s from pesticide exposure, increased risk of cataracts
  • G/G: typical function

Members: Your genotype for rs1800566 is .


SOD1 encodes superoxide dismutase, an enzyme essential for decreasing ROS in cells through counteracting superoxide.

Check your genetic data for rs1041740 (23andMe v4, v5; AncestryDNA):

  • T/T: significantly increased risk for kidney problems in people with diabetes, increased heart disease mortality risk[ref]ref][ref]
  • C/T: increased risk of kidney disease in T1D
  • C/C: typical

Members: Your genotype for rs1041740 is .


SOD2 gene: Superoxide dismutase 2 is a manganese-dependent antioxidant enzyme. It is an important enzyme for reducing oxidative stress in cells.

Check your genetic data for rs5746136 (AncestryDNA):

  • T/T: higher phthalate metabolite levels, almost 3-fold increased risk of asthma[ref], increased risk of PCOS[ref]
  • C/T: increased risk of asthma, PCOS
  • C/C: typical

Members: Your genotype for rs5746136 is .



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About the Author:
Debbie Moon is the founder of Genetic Lifehacks. Fascinated by the connections between genes, diet, and health, her goal is to help you understand how to apply genetics to your diet and lifestyle decisions. Debbie has a BS in engineering and also an MSc in biological sciences from Clemson University. Debbie combines an engineering mindset with a biological systems approach to help you understand how genetic differences impact your optimal health.

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